Zhang Baoyun, Chen Long, Feng Guangde, Xiang Wei, Zhang Ke, Chu Mingxing, Wang Pingqing
Bioengineering Institute of Chongqing University, Chongqing, China.
Sichuan TQLS Animal Husbandry Science and Technology Co., Ltd., Mianyang, China.
Biomed Res Int. 2017;2017:4585213. doi: 10.1155/2017/4585213. Epub 2017 Feb 19.
Ovaries, which provide a place for follicular development and oocyte maturation, are important organs in female mammals. Follicular development is complicated physiological progress mediated by various regulatory factors including microRNAs (miRNAs). To demonstrate the role of miRNAs in follicular development, this study analyzed the expression patterns of miRNAs in granulosa cells through investigating three previous datasets generated by Illumina miRNA deep sequencing. Furthermore, via bioinformatic analyses, we dissected the associated functional networks of the observed significant miRNAs, in terms of interacting with signal pathways and transcription factors. During the growth and selection of dominant follicles, 15 dysregulated miRNAs and 139 associated pathways were screened out. In comparison of different styles of follicles, 7 commonly abundant miRNAs and 195 pathways, as well as 10 differentially expressed miRNAs and 117 pathways in dominant follicles in comparison with subordinate follicles, were collected. Furthermore, SMAD2 was identified as a hub factor in regulating follicular development. The regulation of miR-26a/b on messenger RNA has been further testified by real time PCR. In conclusion, we established functional networks which play critical roles in follicular development including pivotal miRNAs, pathways, and transcription factors, which contributed to the further investigation about miRNAs associated with mammalian follicular development.
卵巢是雌性哺乳动物的重要器官,为卵泡发育和卵母细胞成熟提供场所。卵泡发育是一个复杂的生理过程,由包括微小RNA(miRNA)在内的多种调节因子介导。为了证明miRNA在卵泡发育中的作用,本研究通过调查之前由Illumina miRNA深度测序产生的三个数据集,分析了颗粒细胞中miRNA的表达模式。此外,通过生物信息学分析,我们从与信号通路和转录因子相互作用的角度,剖析了观察到的显著miRNA的相关功能网络。在优势卵泡的生长和选择过程中,筛选出了15个失调的miRNA和139条相关通路。在比较不同类型的卵泡时,收集到了7个常见的丰富miRNA和195条通路,以及与次级卵泡相比,优势卵泡中10个差异表达的miRNA和117条通路。此外,SMAD2被确定为调节卵泡发育的枢纽因子。实时PCR进一步证实了miR-26a/b对信使RNA的调控作用。总之,我们建立了在卵泡发育中起关键作用的功能网络,包括关键的miRNA、通路和转录因子,这有助于进一步研究与哺乳动物卵泡发育相关的miRNA。