Plant Molecular Biology and Genetic Engineering Division, CSIR-National Botanical Research Institute, Lucknow-226 001 Uttar Pradesh, India.
Department of Biotechnology, Kumaun University, Nainital, Uttarakhand, 263001 India.
Sci Rep. 2017 Mar 21;7:44733. doi: 10.1038/srep44733.
Condensed tannin (CT) or proanthocyanidin (PA) is a unique group of phenolic metabolite with high molecular weight with specific structure. It is reported that, the presence of high-CT in the legumes adversely affect the nutrients in the plant and impairs the digestibility upon consumption by animals. Winged bean (Psophocarpus tetragonolobus (L.) DC.) is one of the promising underutilized legume with high protein and oil-content. One of the reasons for its underutilization is due to the presence of CT. Transcriptome sequencing of leaves of two diverse CT-containing lines of P. tetragonolobus was carried out on Illumina Nextseq 500 sequencer to identify the underlying genes and contigs responsible for CT-biosynthesis. RNA-Seq data generated 102586 and 88433 contigs for high (HCTW) and low CT (LCTW) lines of P. tetragonolobus, respectively. Based on the similarity searches against gene ontology (GO) and Kyoto encyclopedia of genes and genomes (KEGG) database revealed 5210 contigs involved in 229 different pathways. A total of 1235 contigs were detected to differentially express between HCTW and LCTW lines. This study along with its findings will be helpful in providing information for functional and comparative genomic analysis of condensed tannin biosynthesis in this plant in specific and legumes in general.
单宁(CT)或原花青素(PA)是一种具有特定结构的高分子量酚类代谢物的独特群体。据报道,豆类中高 CT 的存在会对植物中的营养物质产生不利影响,并降低动物食用时的消化率。四棱豆(Psophocarpus tetragonolobus (L.) DC.)是一种很有前途的低利用率豆类,具有高蛋白和高油含量。其利用率低的原因之一是由于 CT 的存在。对来自两个不同 CT 含量的四棱豆叶片进行了转录组测序,在 Illumina Nextseq 500 测序仪上进行了测序,以鉴定负责 CT 生物合成的潜在基因和基因簇。为高 CT(HCTW)和低 CT(LCTW)四棱豆系生成的 RNA-Seq 数据分别有 102586 和 88433 个序列。根据对基因本体论(GO)和京都基因与基因组百科全书(KEGG)数据库的相似性搜索,发现有 5210 个序列参与了 229 种不同的途径。在 HCTW 和 LCTW 系之间检测到 1235 个序列的差异表达。本研究及其结果将有助于为该植物和一般豆类的 CT 生物合成的功能和比较基因组分析提供信息。