鼠源细菌分离株EF-1的基因组序列草图
Draft Genome Sequence of the Murine Bacterial Isolate EF-1.
作者信息
Fritz Eric, Miller Michael J
机构信息
Department of Food Science and Human Nutrition, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Department of Food Science and Human Nutrition, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
出版信息
Genome Announc. 2017 Mar 23;5(12):e00077-17. doi: 10.1128/genomeA.00077-17.
Abstract
Screening for lysogenic lactobacilli in rat fecal samples has identified EF-1. Whole-genome sequencing revealed a 2.30-Mb draft genome with 39.6% G+C content and 2,196 open reading frames. PHAST analysis identified three intact prophages of 26.1 kb, 25.4 kb, and 49.6 kb in size.
摘要
对大鼠粪便样本中的溶源性乳酸杆菌进行筛选已鉴定出EF-1。全基因组测序揭示了一个2.30兆碱基的草图基因组，G+C含量为39.6%，有2196个开放阅读框。PHAST分析鉴定出三个大小分别为26.1 kb、25.4 kb和49.6 kb的完整原噬菌体。
相似文献
1
Draft Genome Sequence of the Murine Bacterial Isolate EF-1.鼠源细菌分离株EF-1的基因组序列草图
Genome Announc. 2017 Mar 23;5(12):e00077-17. doi: 10.1128/genomeA.00077-17.
2
Draft Genome Sequence of Probiotic Lactobacillus brevis TUCO-5E, Isolated from Porcine Milk.从猪乳中分离的益生菌短乳杆菌TUCO-5E的基因组序列草图
Microbiol Resour Announc. 2018 Nov 15;7(19). doi: 10.1128/MRA.01239-18. eCollection 2018 Nov.
3
The prophage sequences of Lactobacillus plantarum strain WCFS1.植物乳杆菌WCFS1菌株的原噬菌体序列。
Virology. 2003 Nov 25;316(2):245-55. doi: 10.1016/j.virol.2003.08.019.
4
Identification of open reading frames unique to a select agent: Ralstonia solanacearum race 3 biovar 2.鉴定特定病原体特有的开放阅读框：青枯雷尔氏菌3号小种2型
Mol Plant Microbe Interact. 2006 Jan;19(1):69-79. doi: 10.1094/MPMI-19-0069.
5
The draft genome sequence of multidrug-resistant Pseudomonas aeruginosa strain CCBH4851, a nosocomial isolate belonging to clone SP (ST277) that is prevalent in Brazil.多重耐药铜绿假单胞菌菌株CCBH4851的基因组序列草图，该菌株是一株医院分离株，属于在巴西流行的克隆SP（ST277）。
Mem Inst Oswaldo Cruz. 2014 Dec;109(8):1086-7. doi: 10.1590/0074-0276140336. Epub 2014 Dec 2.
6
Genome analysis of the temperate bacteriophage PMBT6 residing in the genome of Bifidobacterium thermophilum MBT94004.居住在双歧杆菌 MBT94004 基因组中的温和噬菌体 PMBT6 的基因组分析。
Arch Virol. 2020 Jan;165(1):233-236. doi: 10.1007/s00705-019-04448-x. Epub 2019 Nov 1.
7
Whole-genome sequencing and characterization of an antibiotic resistant Neisseria meningitidis B isolate from a military unit in Vietnam.对越南一军事单位中分离的耐抗生素脑膜炎奈瑟菌 B 株进行全基因组测序和特征分析。
Ann Clin Microbiol Antimicrob. 2019 May 6;18(1):16. doi: 10.1186/s12941-019-0315-z.
8
Genome sequencing and analysis of the first complete genome of Lactobacillus kunkeei strain MP2, an Apis mellifera gut isolate.来自蜜蜂肠道分离株的库氏乳杆菌MP2菌株首个完整基因组的测序与分析
PeerJ. 2016 Apr 19;4:e1950. doi: 10.7717/peerj.1950. eCollection 2016.
9
Identification, characterisation and specificity of a cell wall lytic enzyme from Lactobacillus fermentum BR11.发酵乳杆菌BR11细胞壁裂解酶的鉴定、表征及特异性
FEMS Microbiol Lett. 2004 Sep 1;238(1):9-15. doi: 10.1016/j.femsle.2004.07.008.
10
Comparative study of vaginal Lactobacillus phages isolated from women in the United States and Turkey: prevalence, morphology, host range, and DNA homology.美国和土耳其女性阴道分离的乳酸杆菌噬菌体的比较研究：流行率、形态、宿主范围和DNA同源性。
Clin Diagn Lab Immunol. 2001 Jan;8(1):31-9. doi: 10.1128/CDLI.8.1.31-39.2001.
本文引用的文献
1
Mining metagenomic whole genome sequences revealed subdominant but constant Lactobacillus population in the human gut microbiota.挖掘宏基因组全基因组序列揭示了人类肠道微生物群中占比次要但稳定的乳酸杆菌种群。
Environ Microbiol Rep. 2016 Jun;8(3):399-406. doi: 10.1111/1758-2229.12405. Epub 2016 May 12.
2
Lytic to temperate switching of viral communities.病毒群落的裂解到温和转换。
Nature. 2016 Mar 24;531(7595):466-70. doi: 10.1038/nature17193. Epub 2016 Mar 16.
3
Prophage-mediated modulation of interaction of Streptococcus thermophilus J34 with human intestinal epithelial cells and its competition against human pathogens.噬菌体介导的嗜热链球菌J34与人类肠道上皮细胞相互作用的调节及其对人类病原体的竞争作用。
Benef Microbes. 2016;7(2):289-97. doi: 10.3920/BM2015.0108. Epub 2015 Dec 21.
4
The human gut virome: a multifaceted majority.人类肠道病毒组：一个多面的主体。
Front Microbiol. 2015 Sep 11;6:918. doi: 10.3389/fmicb.2015.00918. eCollection 2015.
5
PHAST: a fast phage search tool.PHAST：一种快速噬菌体搜索工具。
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W347-52. doi: 10.1093/nar/gkr485. Epub 2011 Jun 14.
6
Characterization of a novel Lactobacillus species closely related to Lactobacillus johnsonii using a combination of molecular and comparative genomics methods.采用分子和比较基因组学方法对一种与 Johnson 乳杆菌密切相关的新型乳酸杆菌进行鉴定。
BMC Genomics. 2010 Sep 17;11:504. doi: 10.1186/1471-2164-11-504.
7
Prodigal: prokaryotic gene recognition and translation initiation site identification.普罗迪格：原核基因识别和翻译起始位点鉴定。
BMC Bioinformatics. 2010 Mar 8;11:119. doi: 10.1186/1471-2105-11-119.
8
In vitro activity of potential probiotic Lactobacillus murinus isolated from the dog.从狗身上分离出的潜在益生菌鼠李糖乳杆菌的体外活性
J Appl Microbiol. 2008 Jun;104(6):1718-25. doi: 10.1111/j.1365-2672.2007.03702.x. Epub 2008 Jan 9.
9
Lactobacillus strain diversity based on partial hsp60 gene sequences and design of PCR-restriction fragment length polymorphism assays for species identification and differentiation.基于部分hsp60基因序列的乳酸杆菌菌株多样性及用于物种鉴定和区分的PCR-限制性片段长度多态性分析方法的设计
Appl Environ Microbiol. 2008 Jan;74(1):208-15. doi: 10.1128/AEM.01711-07. Epub 2007 Nov 9.
10
CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats.CRISPRFinder：一种用于识别成簇规律间隔短回文重复序列的网络工具。
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W52-7. doi: 10.1093/nar/gkm360. Epub 2007 May 30.
Zotero 插件