具有群体感应特性的热带海洋分离株T47的全基因组测序
Whole-genome Sequencing of T47, a Tropical Marine Isolate with Quorum Sensing Properties.
作者信息
Mohamad Nur Izzati, How Kah Yan, Yin Wai-Fong, Chan Kok-Gan
机构信息
Division of Genetics and Molecular Biology, Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, 50603 Malaysia.
出版信息
J Genomics. 2017 Mar 9;5:48-50. doi: 10.7150/jgen.16163. eCollection 2017.
Abstract
A large number of sp. thrive in the marine environment and they are notable to cause food borne infection associated with undercooked seafood. In this study, we report the whole genome sequence of T47 which was isolated from coastal marine water in Morib Beach, Hulu Selangor. The genome is made up of approximately 4.59 Mbp with 80 contigs and 46% G+C content. From the annotated genome, genes associated with quorum sensing (QS) were identified. This research provides a genetic basis for better understanding of QS pathway which contributes to the physiological traits of strain T47 to thrive in the marine environment.
摘要
大量的[具体物种名称未给出]在海洋环境中茁壮成长，它们能够引发与未煮熟海鲜相关的食源性感染。在本研究中，我们报告了从雪兰莪 Hulu 莫立布海滩沿海海水中分离出的 T47 的全基因组序列。该基因组由约 459 万个碱基对组成，有 80 个重叠群，G+C 含量为 46%。从注释基因组中，鉴定出了与群体感应（QS）相关的基因。这项研究为更好地理解群体感应途径提供了遗传基础，该途径有助于菌株 T47 在海洋环境中茁壮成长的生理特性。
相似文献
1
Whole-genome Sequencing of T47, a Tropical Marine Isolate with Quorum Sensing Properties.具有群体感应特性的热带海洋分离株T47的全基因组测序
J Genomics. 2017 Mar 9;5:48-50. doi: 10.7150/jgen.16163. eCollection 2017.
2
Short chain N-acyl homoserine lactone production in tropical marine Vibrio sinaloensis strain T47.热带海洋西纳罗亚弧菌T47菌株中短链N-酰基高丝氨酸内酯的产生
Sensors (Basel). 2014 Jul 18;14(7):12958-67. doi: 10.3390/s140712958.
3
Chromatin Immunoprecipitation Sequencing Technology Reveals Global Regulatory Roles of Low-Cell-Density Quorum-Sensing Regulator AphA in the Pathogen Vibrio alginolyticus.染色质免疫沉淀测序技术揭示了低细胞密度群体感应调节因子AphA在溶藻弧菌病原体中的全局调控作用。
J Bacteriol. 2016 Oct 7;198(21):2985-2999. doi: 10.1128/JB.00520-16. Print 2016 Nov 1.
4
Complete genome sequence of the marine fish pathogen Vibrio anguillarum and genome-wide transposon mutagenesis analysis of genes essential for in vivo infection.海洋鱼类病原体鳗弧菌的全基因组序列和对体内感染必需基因的全基因组转座子诱变分析。
Microbiol Res. 2018 Nov;216:97-107. doi: 10.1016/j.micres.2018.08.011. Epub 2018 Aug 24.
5
Whole-Genome Sequence of Quorum-Sensing Vibrio tubiashii Strain T33.群体感应管氏弧菌菌株T33的全基因组序列
Genome Announc. 2015 Jan 2;3(1):e01362-14. doi: 10.1128/genomeA.01362-14.
6
Effect of the synthetic cannabinoid HU-210 on quorum sensing and on the production of quorum sensing-mediated virulence factors by Vibrio harveyi.合成大麻素HU-210对哈维氏弧菌群体感应及群体感应介导的毒力因子产生的影响。
BMC Microbiol. 2015 Aug 12;15:159. doi: 10.1186/s12866-015-0499-0.
7
The phosphorylation flow of the Vibrio harveyi quorum-sensing cascade determines levels of phenotypic heterogeneity in the population.哈维氏弧菌群体感应级联反应的磷酸化流程决定了群体中表型异质性的水平。
J Bacteriol. 2015 May;197(10):1747-56. doi: 10.1128/JB.02544-14. Epub 2015 Mar 9.
8
Quorum sensing in spp.: the complexity of multiple signalling molecules in marine and aquatic environments.海洋和水生环境中 spp. 的群体感应：多种信号分子的复杂性。
Crit Rev Microbiol. 2019 Aug;45(4):451-471. doi: 10.1080/1040841X.2019.1624499. Epub 2019 Jun 26.
9
Quorum sensing regulates type III secretion in Vibrio harveyi and Vibrio parahaemolyticus.群体感应调节哈维氏弧菌和副溶血性弧菌中的III型分泌。
J Bacteriol. 2004 Jun;186(12):3794-805. doi: 10.1128/JB.186.12.3794-3805.2004.
10
Quorum Sensing Signaling Alters Virulence Potential and Population Dynamics in Complex Microbiome-Host Interactomes.群体感应信号传导改变复杂微生物组-宿主互作组中的毒力潜力和种群动态。
Front Microbiol. 2019 Sep 11;10:2131. doi: 10.3389/fmicb.2019.02131. eCollection 2019.
本文引用的文献
1
Short chain N-acyl homoserine lactone production in tropical marine Vibrio sinaloensis strain T47.热带海洋西纳罗亚弧菌T47菌株中短链N-酰基高丝氨酸内酯的产生
Sensors (Basel). 2014 Jul 18;14(7):12958-67. doi: 10.3390/s140712958.
2
A nitric oxide-responsive quorum sensing circuit in Vibrio harveyi regulates flagella production and biofilm formation.在哈维氏弧菌中，一氧化氮响应型群体感应回路调控鞭毛生成和生物膜形成。
Int J Mol Sci. 2013 Aug 8;14(8):16473-84. doi: 10.3390/ijms140816473.
3
4
Multilocus sequence analysis of the central clade of the genus Vibrio by using the 16S rRNA, recA, pyrH, rpoD, gyrB, rctB and toxR genes.利用 16S rRNA、recA、pyrH、rpoD、gyrB、rctB 和 toxR 基因对弧菌属中心分支进行多位点序列分析。
Int J Syst Evol Microbiol. 2010 Jan;60(Pt 1):154-165. doi: 10.1099/ijs.0.010702-0. Epub 2009 Jul 31.
5
IMG ER: a system for microbial genome annotation expert review and curation.IMG ER：一个用于微生物基因组注释专家评审和整理的系统。
Bioinformatics. 2009 Sep 1;25(17):2271-8. doi: 10.1093/bioinformatics/btp393. Epub 2009 Jun 27.
6
Vibrio sinaloensis sp. nov., isolated from the spotted rose snapper, Lutjanus guttatus Steindachner, 1869.新种西纳洛埃弧菌，从1869年施泰因达赫纳命名的点带石斑鱼（Lutjanus guttatus）中分离得到。
Int J Syst Evol Microbiol. 2008 Jul;58(Pt 7):1621-4. doi: 10.1099/ijs.0.65719-0.
7
The Vibrio harveyi quorum-sensing system uses shared regulatory components to discriminate between multiple autoinducers.哈维氏弧菌群体感应系统利用共享的调控元件来区分多种自诱导物。
Genes Dev. 2006 Oct 1;20(19):2754-67. doi: 10.1101/gad.1466506.
8
Three parallel quorum-sensing systems regulate gene expression in Vibrio harveyi.三个并行的群体感应系统调控哈维氏弧菌中的基因表达。
J Bacteriol. 2004 Oct;186(20):6902-14. doi: 10.1128/JB.186.20.6902-6914.2004.
9
Vibrio fischeri LuxS and AinS: comparative study of two signal synthases.费氏弧菌LuxS和AinS：两种信号合成酶的比较研究
J Bacteriol. 2004 Jun;186(12):3873-81. doi: 10.1128/JB.186.12.3873-3881.2004.
10
The Vibrio fischeri quorum-sensing systems ain and lux sequentially induce luminescence gene expression and are important for persistence in the squid host.费氏弧菌群体感应系统ain和lux依次诱导发光基因表达，对在鱿鱼宿主中的存活很重要。
Mol Microbiol. 2003 Oct;50(1):319-31. doi: 10.1046/j.1365-2958.2003.t01-1-03585.x.
Zotero 插件