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基于红藻中新建立的氯霉素选择系统通过两步转化开发双核基因靶向方法

Development of a Double Nuclear Gene-Targeting Method by Two-Step Transformation Based on a Newly Established Chloramphenicol-Selection System in the Red Alga .

作者信息

Fujiwara Takayuki, Ohnuma Mio, Kuroiwa Tsuneyoshi, Ohbayashi Ryudo, Hirooka Shunsuke, Miyagishima Shin-Ya

机构信息

Department of Cell Genetics, National Institute of GeneticsShizuoka, Japan; Japan Science and Technology Agency, Core Research for Evolutional Science and TechnologySaitama, Japan; Department of Genetics, Graduate University for Advanced StudiesShizuoka, Japan.

Japan Science and Technology Agency, Core Research for Evolutional Science and TechnologySaitama, Japan; National Institute of Technology, Hiroshima CollegeHiroshima, Japan.

出版信息

Front Plant Sci. 2017 Mar 14;8:343. doi: 10.3389/fpls.2017.00343. eCollection 2017.

DOI:10.3389/fpls.2017.00343
PMID:28352279
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5348525/
Abstract

The unicellular red alga possesses a simple cellular architecture that consists of one mitochondrion, one chloroplast, one peroxisome, one Golgi apparatus, and several lysosomes. The nuclear genome content is also simple, with very little genetic redundancy (16.5 Mbp, 4,775 genes). In addition, molecular genetic tools such as gene targeting and inducible gene expression systems have been recently developed. These cytological features and genetic tractability have facilitated various omics analyses. However, only a single transformation selection marker has been made available and thus the application of genetic modification has been limited. Here, we report the development of a nuclear targeting method by using chloramphenicol and the chloramphenicol acetyltransferase () gene. In addition, we found that at least 200-bp homologous arms are required and 500-bp arms are sufficient for a targeted single-copy insertion of the selection marker into the nuclear genome. By means of a combination of the and transformation systems, we succeeded in producing a strain that expresses HA-cyclin 1 and FLAG-CDKA from the chromosomal and loci, respectively. These methods of multiple nuclear targeting will facilitate genetic manipulation of .

摘要

单细胞红藻具有简单的细胞结构,由一个线粒体、一个叶绿体、一个过氧化物酶体、一个高尔基体和几个溶酶体组成。其核基因组含量也很简单,遗传冗余极少(1650万碱基对,4775个基因)。此外,最近还开发了诸如基因靶向和诱导型基因表达系统等分子遗传学工具。这些细胞学特征和遗传易处理性促进了各种组学分析。然而,目前仅有一种转化选择标记可用,因此基因修饰的应用受到限制。在此,我们报告了一种利用氯霉素和氯霉素乙酰转移酶()基因的核靶向方法的开发。此外,我们发现至少需要200碱基对的同源臂,500碱基对的臂足以将选择标记靶向单拷贝插入核基因组。通过和转化系统的组合,我们成功构建了一个分别从染色体和位点表达HA-细胞周期蛋白1和FLAG-CDKA的菌株。这些多核靶向方法将促进对的基因操作。

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本文引用的文献

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Plant Mol Biol. 2017 Jan;93(1-2):171-183. doi: 10.1007/s11103-016-0554-8. Epub 2016 Oct 28.
2
Chloramphenicol acetyltransferase-a new selectable marker in stable nuclear transformation of the red alga Cyanidioschyzon merolae.氯霉素乙酰转移酶——红藻梅洛拟球藻稳定核转化中的一种新的选择标记。
Protoplasma. 2017 Jan;254(1):587-596. doi: 10.1007/s00709-015-0936-9. Epub 2015 Dec 29.
3
Construction of a URA5.3 deletion strain of the unicellular red alga Cyanidioschyzon merolae: A backgroundless host strain for transformation experiments.
在单细胞红藻衣藻中开发雷帕霉素诱导的蛋白敲低系统。
Plant Physiol. 2024 Sep 2;196(1):77-94. doi: 10.1093/plphys/kiae316.
4
The synthetic future of algal genomes.藻类基因组的合成未来。
Cell Genom. 2024 Mar 13;4(3):100505. doi: 10.1016/j.xgen.2024.100505. Epub 2024 Feb 22.
5
Engineered ketocarotenoid biosynthesis in the polyextremophilic red microalga 10D.在多极端嗜热红色微藻10D中进行工程化酮类胡萝卜素生物合成。
Metab Eng Commun. 2023 Jun 26;17:e00226. doi: 10.1016/j.mec.2023.e00226. eCollection 2023 Dec.
6
Cultivation of the polyextremophile 10D during summer conditions on the coast of the Red Sea and its adaptation to hypersaline sea water.在红海沿岸夏季条件下对多极端嗜极菌10D进行培养及其对高盐海水的适应性研究。
Front Microbiol. 2023 Apr 20;14:1157151. doi: 10.3389/fmicb.2023.1157151. eCollection 2023.
7
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Bio Protoc. 2019 Apr 5;9(7):e3204. doi: 10.21769/BioProtoc.3204.
单细胞红藻梅氏嗜热栖热菌URA5.3缺失菌株的构建:用于转化实验的无背景宿主菌株。
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Subcellular distribution of central carbohydrate metabolism pathways in the red alga Cyanidioschyzon merolae.红藻梅氏嗜热栖热菌中碳水化合物中心代谢途径的亚细胞分布
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Translation-independent circadian control of the cell cycle in a unicellular photosynthetic eukaryote.单细胞光合真核生物中细胞周期的与翻译无关的昼夜节律控制。
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