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远洋光铁营养菌的基因组序列草图

Draft Genome Sequence of the Pelagic Photoferrotroph .

作者信息

Crowe Sean A, Hahn Aria S, Morgan-Lang Connor, Thompson Katherine J, Simister Rachel L, Llirós Marc, Hirst Martin, Hallam Steven J

机构信息

Department of Microbiology and Immunology, University of British Columbia, Vancouver, British Columbia, Canada

Department of Earth, Ocean, and Atmospheric Sciences, University of British Columbia, Vancouver, British Columbia, Canada.

出版信息

Genome Announc. 2017 Mar 30;5(13):e01584-16. doi: 10.1128/genomeA.01584-16.

DOI:10.1128/genomeA.01584-16
PMID:28360175
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5374249/
Abstract

Here, we report the draft genome sequence of , a photoferrotrophic member of the genus in the phylum This genome sequence provides insight into the metabolic capacity that underpins photoferrotrophy within low-light-adapted pelagic .

摘要

在此，我们报告了 （某菌名）的基因组序列草图，它是 门 属的光合铁营养成员。该基因组序列有助于深入了解适应弱光的远洋环境中光合铁营养背后的代谢能力。

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本文引用的文献

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Pelagic photoferrotrophy and iron cycling in a modern ferruginous basin.现代铁质盆地中的远洋光致铁营养作用与铁循环
Sci Rep. 2015 Sep 8;5:13803. doi: 10.1038/srep13803.
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New Insight into Microbial Iron Oxidation as Revealed by the Proteomic Profile of an Obligate Iron-Oxidizing Chemolithoautotroph.专性铁氧化化能无机自养菌蛋白质组学剖析揭示微生物铁氧化的新见解
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CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM：评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
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MetaPathways: a modular pipeline for constructing pathway/genome databases from environmental sequence information.MetaPathways：一种从环境序列信息构建途径/基因组数据库的模块化管道。
BMC Bioinformatics. 2013 Jun 21;14:202. doi: 10.1186/1471-2105-14-202.
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Chlorobium ferrooxidans sp. nov., a phototrophic green sulfur bacterium that oxidizes ferrous iron in coculture with a "Geospirillum" sp. strain.嗜铁绿菌属新种，一种光合绿色硫细菌，与“地螺菌属”菌株共培养时可氧化亚铁。
Arch Microbiol. 1999 Aug;172(2):116-24. doi: 10.1007/s002030050748.