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影响结直肠癌预后的20基因模型的构建与验证

The Generation and Validation of a 20-Genes Model Influencing the Prognosis of Colorectal Cancer.

作者信息

Xie Xiao-Jun, Liu Ping, Cai Chu-Dong, Zhuang Ying-Ru, Zhang Li, Zhuang Hai-Wen

机构信息

Department of General Surgery, The First Affiliated Hospital of Shantou University Medical College, Shantou, China.

Department of Pathology, Shiyan Taihe Hospital, Hubei University of Medicine, Shiyan City, Hubei Province, China.

出版信息

J Cell Biochem. 2017 Nov;118(11):3675-3685. doi: 10.1002/jcb.26013. Epub 2017 May 30.

DOI:10.1002/jcb.26013
PMID:28370286
Abstract

Colorectal cancer is a common malignant tumor with high incidence affecting the digestive system. This study aimed to identify the key genes relating to prognosis of colorectal cancer and to construct a prognostic model for its risk evaluation. Gene expression profiling of colorectal cancer patients, GSE17537, was downloaded from Gene Expression Omnibus database (GEO). A total of 55 samples from patients ranging from stages 1 to 4 were available. Differentially expressed genes were screened, with which single factor survival analysis was performed to identify the response genes. Interacting network and KEGG enrichment analysis of responsive genes were performed to identify key genes. In return, Fisher enrichment analysis, literature mining, and Kaplan-Meier analysis were used to verify the effectiveness of the prognostic model. The 20-gene model generated in this study posed significant influences on the prognoses (P = 9.691065e-09). Significance was verified via independent dataset GSE38832 (P = 9.86581e-07) and GSE17536 (P = 2.741e-08). The verified effective 20-gene model could be utilized to predict prognosis of patients with colorectal cancer and would contribute to post-operational treatment and follow-up strategies. J. Cell. Biochem. 118: 3675-3685, 2017. © 2017 Wiley Periodicals, Inc.

摘要

结直肠癌是一种常见的、发病率高的影响消化系统的恶性肿瘤。本研究旨在鉴定与结直肠癌预后相关的关键基因,并构建用于风险评估的预后模型。从基因表达综合数据库(GEO)下载了结直肠癌患者的基因表达谱GSE17537。共有55例1至4期患者的样本可用。筛选差异表达基因,并对其进行单因素生存分析以鉴定反应基因。对反应基因进行相互作用网络和KEGG富集分析以鉴定关键基因。反过来,使用Fisher富集分析、文献挖掘和Kaplan-Meier分析来验证预后模型的有效性。本研究中生成的20基因模型对预后有显著影响(P = 9.691065e-09)。通过独立数据集GSE38832(P = 9.86581e-07)和GSE17536(P = 2.741e-08)验证了其显著性。经验证有效的20基因模型可用于预测结直肠癌患者的预后,并将有助于术后治疗和随访策略。《细胞生物化学杂志》118:3675 - 3685,2017年。©2017威利期刊公司

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