Karlin S, Morris M, Ghandour G, Leung M Y
Department of Mathematics, Stanford University, CA 94305.
Comput Appl Biosci. 1988 Mar;4(1):41-51. doi: 10.1093/bioinformatics/4.1.41.
Efficient algorithms are described for identifying local molecular sequence features including repeats, dyad symmetry pairings and aligned matches between sequences, while allowing for errors. Specific applications are given to the genomic sequences of the Epstein-Barr virus, Varicella-Zoster virus and the bacteriophages lambda and T7.