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DNA凝胶电泳中条带的混乱。

Scrambling of bands in gel electrophoresis of DNA.

作者信息

Lalande M, Noolandi J, Turmel C, Brousseau R, Rousseau J, Slater G W

机构信息

National Research Council Canada, Biotechnology Research Institute, Montréal, Québec.

出版信息

Nucleic Acids Res. 1988 Jun 24;16(12):5427-37. doi: 10.1093/nar/16.12.5427.

DOI:10.1093/nar/16.12.5427
PMID:2838816
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC336776/
Abstract

Under certain conditions of agarose gel electrophoresis, larger DNA molecules migrate faster than smaller ones. This anomalous mobility of DNA, which can lead to serious errors in the measurement of DNA fragment lengths, is related to near-zero velocity conformations which can trap DNA chains during electrophoresis. Intermittent electric fields can be used to alter the chain conformations so as to restore the monotonic mobility-size relationship which is necessary for a correct interpretation of the gel. These data are in agreement with the results of a computer simulation based on a theoretical model of electrophoresis.

摘要

在某些琼脂糖凝胶电泳条件下,较大的DNA分子比较小的DNA分子迁移得更快。DNA的这种异常迁移率可能会导致DNA片段长度测量中出现严重误差,这与接近零速度的构象有关,这种构象在电泳过程中会捕获DNA链。可以使用间歇电场来改变链构象,以恢复凝胶正确解读所必需的单调迁移率-大小关系。这些数据与基于电泳理论模型的计算机模拟结果一致。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8c9d/336776/5d2f5d38e40b/nar00155-0210-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8c9d/336776/d540ed21c164/nar00155-0208-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8c9d/336776/5d2f5d38e40b/nar00155-0210-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8c9d/336776/d540ed21c164/nar00155-0208-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8c9d/336776/5d2f5d38e40b/nar00155-0210-a.jpg

相似文献

1
Scrambling of bands in gel electrophoresis of DNA.DNA凝胶电泳中条带的混乱。
Nucleic Acids Res. 1988 Jun 24;16(12):5427-37. doi: 10.1093/nar/16.12.5427.
2
Electrophoretic mobility of lambda phage HIND III and HAE III DNA fragments in agarose gels: a detailed study.λ噬菌体HIND III和HAE III DNA片段在琼脂糖凝胶中的电泳迁移率:一项详细研究。
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Alkaline gel electrophoresis of deoxyribonucleic acid photoreacted with trimethylpsoralen: rapid and sensitive detection of interstrand cross-links.用三甲基补骨脂素进行光反应的脱氧核糖核酸的碱性凝胶电泳:链间交联的快速灵敏检测
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引用本文的文献

1
Pulsed-field gel electrophoresis.脉冲场凝胶电泳
Mol Biotechnol. 1998 Apr;9(2):107-26. doi: 10.1007/BF02760813.
2
Molecular detrapping and band narrowing with high frequency modulation of pulsed field electrophoresis.脉冲场电泳高频调制下的分子解捕获与条带变窄
Nucleic Acids Res. 1990 Feb 11;18(3):569-75. doi: 10.1093/nar/18.3.569.

本文引用的文献

1
Self-trapping and anomalous dispersion of DNA in electrophoresis.DNA在电泳中的自陷俘与反常色散
Phys Rev Lett. 1987 Jun 8;58(23):2428-2431. doi: 10.1103/PhysRevLett.58.2428.
2
Why does the electrophoretic mobility of DNA in gels vary with the length of the molecule?为什么DNA在凝胶中的电泳迁移率会随分子长度而变化?
Biopolymers. 1982 May;21(5):995-7. doi: 10.1002/bip.360210511.
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Analysis of the electrophoretic properties of double-stranded DNA and RNA in agarose gels at a finite voltage gradient.在有限电压梯度下对琼脂糖凝胶中双链DNA和RNA的电泳特性进行分析。
Biopolymers. 1984 Dec;23(12):2725-42. doi: 10.1002/bip.360231204.
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Separation of yeast chromosome-sized DNAs by pulsed field gradient gel electrophoresis.通过脉冲场梯度凝胶电泳分离酵母染色体大小的DNA。
Cell. 1984 May;37(1):67-75. doi: 10.1016/0092-8674(84)90301-5.
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Transforming potential of a human protooncogene (c-fps/fes) locus.一种人类原癌基因(c-fps/fes)位点的转化潜能。
Proc Natl Acad Sci U S A. 1984 May;81(10):3039-43. doi: 10.1073/pnas.81.10.3039.
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Isolation and characterization of a human locus homologous to the transforming gene (v-fes) of feline sarcoma virus.一种与猫肉瘤病毒转化基因(v-fes)同源的人类基因座的分离与鉴定。
J Biol Chem. 1982 Mar 25;257(6):2730-3.
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Measurement of DNA length by gel electrophoresis. I. Improved accuracy of mobility measurements using a digital microdensitometer and computer processing.通过凝胶电泳测量DNA长度。I. 使用数字显微密度计和计算机处理提高迁移率测量的准确性。
Anal Biochem. 1983 Jan;128(1):223-6. doi: 10.1016/0003-2697(83)90368-8.
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Nucleotide sequence of bacteriophage lambda DNA.噬菌体λDNA的核苷酸序列。
J Mol Biol. 1982 Dec 25;162(4):729-73. doi: 10.1016/0022-2836(82)90546-0.
9
Hybridization of nucleic acids immobilized on solid supports.固定在固体支持物上的核酸杂交。
Anal Biochem. 1984 May 1;138(2):267-84. doi: 10.1016/0003-2697(84)90808-x.
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Theory of gel electrophoresis of DNA.DNA凝胶电泳理论
Biopolymers. 1985 Aug;24(8):1573-93. doi: 10.1002/bip.360240812.