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脉冲场电泳高频调制下的分子解捕获与条带变窄

Molecular detrapping and band narrowing with high frequency modulation of pulsed field electrophoresis.

作者信息

Turmel C, Brassard E, Slater G W, Noolandi J

机构信息

Xerox Research Centre of Canada, Mississauga, Ontario.

出版信息

Nucleic Acids Res. 1990 Feb 11;18(3):569-75. doi: 10.1093/nar/18.3.569.

DOI:10.1093/nar/18.3.569
PMID:2408015
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC333463/
Abstract

In high electric fields, megabase DNA fragments are found to be trapped, i.e. to enter or migrate in the gel only very slowly, if at all, leading to very broad electrophoretic bands and loss of separation. As a consequence, low electric fields are usually used to separate these molecules by pulsed field electrophoretic methods. We report here that high-frequency pulses eliminate the molecular trapping found in continuous fields. When high frequency pulses are used to modulate the longer pulses used in pulsed field electrophoresis, narrower bands result, and higher fields can be used. We suggest that this is due to effects that occur on the length scale of a single pore.

摘要

在高电场中,发现兆碱基DNA片段会被困住,即进入凝胶或在凝胶中迁移极其缓慢,甚至根本不迁移,导致电泳带非常宽且失去分离效果。因此,通常使用低电场通过脉冲场电泳方法分离这些分子。我们在此报告,高频脉冲消除了连续电场中出现的分子捕获现象。当使用高频脉冲调制脉冲场电泳中使用的较长脉冲时,会产生更窄的条带,并且可以使用更高的电场。我们认为这是由于在单个孔的长度尺度上发生的效应。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9cc/333463/4283aea30b16/nar00187-0169-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9cc/333463/b4f62a478059/nar00187-0166-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9cc/333463/35794c19aeb9/nar00187-0167-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9cc/333463/aa88f3129ff2/nar00187-0168-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9cc/333463/5e29d66c8d45/nar00187-0169-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9cc/333463/4283aea30b16/nar00187-0169-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9cc/333463/b4f62a478059/nar00187-0166-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9cc/333463/35794c19aeb9/nar00187-0167-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9cc/333463/aa88f3129ff2/nar00187-0168-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9cc/333463/5e29d66c8d45/nar00187-0169-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9cc/333463/4283aea30b16/nar00187-0169-b.jpg

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本文引用的文献

1
Direct observation of DNA chain orientation and relaxation by electric birefringence: Implications for the mechanism of separation during pulsed-field gel electrophoresis.通过电场双折射直接观察DNA链的取向和松弛:对脉冲场凝胶电泳分离机制的启示
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Self-trapping and anomalous dispersion of DNA in electrophoresis.DNA在电泳中的自陷俘与反常色散
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Trapping of megabase-sized DNA molecules during agarose gel electrophoresis.琼脂糖凝胶电泳过程中兆碱基大小DNA分子的滞留
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Pulsed-field gel electrophoresis.脉冲场凝胶电泳
Mol Biotechnol. 1998 Apr;9(2):107-26. doi: 10.1007/BF02760813.
8
Purification and staining of intact yeast DNA chromosomes and real-time observation of their migration during gel electrophoresis.完整酵母DNA染色体的纯化与染色及其在凝胶电泳过程中迁移的实时观察
Biochem J. 1997 Aug 15;326 ( Pt 1)(Pt 1):131-8. doi: 10.1042/bj3260131.
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Reptation theories of electrophoresis.电泳的爬行理论。
Mol Biotechnol. 1996 Aug;6(1):31-46. doi: 10.1007/BF02762321.
10
Preparation, manipulation, and pulse strategy for one-dimensional pulsed-field gel electrophoresis (ODPFGE).一维脉冲场凝胶电泳(ODPFGE)的制备、操作及脉冲策略
Mol Biotechnol. 1995 Aug;4(1):25-43. doi: 10.1007/BF02907469.
通过正交交变电场凝胶电泳从酵母中分离染色体DNA分子。
Nucleic Acids Res. 1984 Jul 25;12(14):5647-64. doi: 10.1093/nar/12.14.5647.
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Separation of yeast chromosome-sized DNAs by pulsed field gradient gel electrophoresis.通过脉冲场梯度凝胶电泳分离酵母染色体大小的DNA。
Cell. 1984 May;37(1):67-75. doi: 10.1016/0092-8674(84)90301-5.
5
Effect of the electric field on the apparent mobility of large DNA fragments in agarose gels.电场对琼脂糖凝胶中大型DNA片段表观迁移率的影响。
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