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编码人核糖体5S RNA的基因的体外完全合成与转录

Complete synthesis and transcription in vitro of a gene coding for human ribosomal 5S RNA.

作者信息

Wingender E, Frank R, Blöcker H, Wang L R, Jahn D, Seifart K H

机构信息

Gesellschaft für Biotechnologische Forschung, Braunschweig, F.R.G.

出版信息

Gene. 1988 Apr 15;64(1):77-85. doi: 10.1016/0378-1119(88)90482-9.

DOI:10.1016/0378-1119(88)90482-9
PMID:2840349
Abstract

The gene coding for the major human ribosomal 5S RNA was chemically synthesized and cloned into a pUC13 vector. This approach was taken, because attempts to isolate the human 5S gene have thus far yielded either pseudogenes or variant 5S genes of unknown function. The synthetic human gene was transcribed by RNA polymerase III either in a crude HeLa cell extract or in a system reconstituted from partially purified transcription factors. Comparative studies with the Xenopus laevis somatic 5S gene show that the human gene is transcribed with similar fidelity and an efficiency of about 80% under optimal conditions. The time-course of transcription and optimal concentrations of template and transcription factors were found to be similar for both genes studied. The synthetic gene described may prove useful to study its interaction with human transcription factors in a homologous system.

摘要

编码主要人类核糖体5S RNA的基因经化学合成后克隆到pUC13载体中。之所以采用这种方法,是因为迄今为止,分离人类5S基因的尝试要么得到假基因,要么得到功能未知的变异5S基因。合成的人类基因由RNA聚合酶III在粗制的HeLa细胞提取物中或在由部分纯化的转录因子重构的系统中进行转录。与非洲爪蟾体细胞5S基因的比较研究表明,在最佳条件下,人类基因以相似的保真度转录,效率约为80%。研究发现,两个基因的转录时间进程以及模板和转录因子的最佳浓度相似。所述的合成基因可能被证明有助于在同源系统中研究其与人类转录因子的相互作用。

相似文献

1
Complete synthesis and transcription in vitro of a gene coding for human ribosomal 5S RNA.编码人核糖体5S RNA的基因的体外完全合成与转录
Gene. 1988 Apr 15;64(1):77-85. doi: 10.1016/0378-1119(88)90482-9.
2
A variant gene and a pseudogene for human 5S RNA are transcriptionally active in vitro.人类5S RNA的一个变异基因和一个假基因在体外具有转录活性。
Gene. 1987;60(1):137-44. doi: 10.1016/0378-1119(87)90221-6.
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[Intragenomic polymorphism of the primary structure of 5S rRNA gene variants of the loach (Misgurnus fossilis L.). Determination of the transcriptional activity].[泥鳅(Misgurnus fossilis L.)5S rRNA基因变体一级结构的基因组内多态性。转录活性的测定]
Mol Biol (Mosk). 1989 Sep-Oct;23(5):1295-308.
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Oocyte and somatic 5S ribosomal RNA and 5S RNA encoding genes in Xenopus tropicalis.热带爪蟾中的卵母细胞和体细胞5S核糖体RNA及5S RNA编码基因。
Nucleic Acids Res. 1988 Sep 26;16(18):8803-15. doi: 10.1093/nar/16.18.8803.
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Structure and transcription of the 5S rRNA gene from spinach chloroplasts.菠菜叶绿体5S核糖体RNA基因的结构与转录
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A 3' exonuclease activity degrades the pseudogene 5S RNA transcript and processes the major oocyte 5S RNA transcript in Xenopus oocytes.一种3'核酸外切酶活性可降解非洲爪蟾卵母细胞中的假基因5S RNA转录本,并加工主要的卵母细胞5S RNA转录本。
Genes Dev. 1989 Jul;3(7):1008-18. doi: 10.1101/gad.3.7.1008.
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Sequence differences upstream of the promoters are involved in the differential expression of the Xenopus somatic and oocyte 5S RNA genes.启动子上游的序列差异与非洲爪蟾体细胞和卵母细胞5S RNA基因的差异表达有关。
Nucleic Acids Res. 1988 Apr 25;16(8):3391-403. doi: 10.1093/nar/16.8.3391.
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Human transcription factor TFIIIC2 specifically interacts with a unique sequence in the Xenopus laevis 5S rRNA gene.人类转录因子TFIIIC2与非洲爪蟾5S rRNA基因中的一个独特序列特异性相互作用。
Mol Cell Biol. 1989 Nov;9(11):4941-50. doi: 10.1128/mcb.9.11.4941-4950.1989.
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Differential 5S RNA gene expression in vitro.体外5S RNA基因的差异表达
Cell. 1987 Dec 4;51(5):733-40. doi: 10.1016/0092-8674(87)90096-1.
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Sequences preceding the minimal promoter of the Xenopus somatic 5S RNA gene increase binding efficiency for transcription factors.非洲爪蟾体细胞5S RNA基因最小启动子之前的序列可提高转录因子的结合效率。
Nucleic Acids Res. 1989 Nov 25;17(22):9381-94.

引用本文的文献

1
Transcription factor IIA stimulates the expression of classical polIII-genes.转录因子IIA刺激经典的RNA聚合酶III基因的表达。
Nucleic Acids Res. 1993 Feb 25;21(4):1013-8. doi: 10.1093/nar/21.4.1013.
2
Transcription of human 5S rRNA genes is influenced by an upstream DNA sequence.人类5S核糖体RNA基因的转录受上游DNA序列的影响。
Nucleic Acids Res. 1993 Aug 11;21(16):3631-6. doi: 10.1093/nar/21.16.3631.
3
Purification of human transcription factor IIIC and its binding to the gene for ribosomal 5S RNA.人转录因子IIIC的纯化及其与核糖体5S RNA基因的结合。
Nucleic Acids Res. 1989 Jul 11;17(13):5003-16. doi: 10.1093/nar/17.13.5003.
4
Yeast TFIIIA + TFIIIC/tau-factor, but not yeast TFIIIA alone, interacts with the Xenopus 5S rRNA gene.酵母TFIIIA + TFIIIC/τ因子,而非单独的酵母TFIIIA,可与非洲爪蟾5S rRNA基因相互作用。
Nucleic Acids Res. 1991 Feb 11;19(3):565-71. doi: 10.1093/nar/19.3.565.
5
Characterization of human 5S rRNA genes.人类5S核糖体RNA基因的特征分析
Nucleic Acids Res. 1991 Aug 11;19(15):4147-51. doi: 10.1093/nar/19.15.4147.