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最早分化的真后生动物门中的A到I RNA编辑

A-to-I RNA Editing in the Earliest-Diverging Eumetazoan Phyla.

作者信息

Porath Hagit T, Schaffer Amos A, Kaniewska Paulina, Alon Shahar, Eisenberg Eli, Rosenthal Joshua, Levanon Erez Y, Levy Oren

机构信息

The Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat-Gan, Israel.

Global Change Institute, The University of Queensland, St Lucia, Australia.

出版信息

Mol Biol Evol. 2017 Aug 1;34(8):1890-1901. doi: 10.1093/molbev/msx125.

Abstract

The highly conserved ADAR enzymes, found in all multicellular metazoans, catalyze the editing of mRNA transcripts by the deamination of adenosines to inosines. This type of editing has two general outcomes: site specific editing, which frequently leads to recoding, and clustered editing, which is usually found in transcribed genomic repeats. Here, for the first time, we looked for both editing of isolated sites and clustered, non-specific sites in a basal metazoan, the coral Acropora millepora during spawning event, in order to reveal its editing pattern. We found that the coral editome resembles the mammalian one: it contains more than 500,000 sites, virtually all of which are clustered in non-coding regions that are enriched for predicted dsRNA structures. RNA editing levels were increased during spawning and increased further still in newly released gametes. This may suggest that editing plays a role in introducing variability in coral gametes.

摘要

在所有多细胞后生动物中都能发现高度保守的腺苷脱氨酶(ADAR)酶,它通过将腺苷脱氨为肌苷来催化mRNA转录本的编辑。这种编辑类型有两个总体结果:位点特异性编辑,通常会导致重新编码;成簇编辑,通常出现在转录的基因组重复序列中。在这里,我们首次在基础后生动物——产卵期的珊瑚多孔鹿角珊瑚中寻找孤立位点的编辑和成簇的非特异性位点,以揭示其编辑模式。我们发现珊瑚的编辑组类似于哺乳动物的编辑组:它包含超过50万个位点,几乎所有这些位点都聚集在富含预测双链RNA结构的非编码区域。在产卵期间RNA编辑水平增加,在新释放的配子中进一步增加。这可能表明编辑在引入珊瑚配子的变异性方面发挥作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d627/5850803/7faaf2fd9b91/msx125f1.jpg

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