从塞内加尔土壤中分离出的耐盐固氮细菌LCM 4573菌株的永久基因组草图序列
Permanent Draft Genome Sequence of sp. Strain LCM 4573, a Salt-Tolerant, Nitrogen-Fixing Bacterium Isolated from Senegalese Soils.
作者信息
Diagne Nathalie, Swanson Erik, Pesce Céline, Fall Fatoumata, Diouf Fatou, Bakhoum Niokhor, Fall Dioumacor, Ndigue Faye Mathieu, Oshone Rediet, Simpson Stephen, Morris Krystalynne, Thomas W Kelley, Moulin Lionel, Diouf Diegane, Tisa Louis S
机构信息
Centre National de Recherches Agronomiques, Institut Sénégalais de Recherches Agricoles (CNRA/ISRA), Bambey, Senegal.
Laboratoire Mixte International Adaptation des Plantes et Microorganismes Associés aux Stress Environnementaux (LAPSE), Centre de Recherche de Bel Air, Dakar-Bel Air, Senegal.
出版信息
Genome Announc. 2017 May 4;5(18):e00285-17. doi: 10.1128/genomeA.00285-17.
Abstract
The genus contains many species that are able to form nitrogen-fixing nodules on plants of the legume family. Here, we report the 5.5-Mb draft genome sequence of the salt-tolerant sp. strain LCM 4573, which has a G+C content of 61.2% and 5,356 candidate protein-encoding genes.
摘要
该属包含许多能够在豆科植物上形成固氮根瘤的物种。在此，我们报告了耐盐菌株LCM 4573的550万个碱基对的基因组草图序列，其G+C含量为61.2%，有5356个候选蛋白质编码基因。
相似文献
1
Permanent Draft Genome Sequence of sp. Strain LCM 4573, a Salt-Tolerant, Nitrogen-Fixing Bacterium Isolated from Senegalese Soils.从塞内加尔土壤中分离出的耐盐固氮细菌LCM 4573菌株的永久基因组草图序列
Genome Announc. 2017 May 4;5(18):e00285-17. doi: 10.1128/genomeA.00285-17.
2
Permanent Draft Genome Sequence of sp. Strain LCM 4579, a Salt-Tolerant, Nitrogen-Fixing Bacterium Isolated from Senegalese Soil.从塞内加尔土壤中分离出的耐盐固氮细菌sp. 菌株LCM 4579的永久基因组序列草图
Genome Announc. 2017 Apr 6;5(14):e00117-17. doi: 10.1128/genomeA.00117-17.
3
Permanent Draft Genome Sequences for sp. Strains LCM 4576, LCM 4577, and ORS3428, Salt-Tolerant, Nitrogen-Fixing Bacteria Isolated from Senegalese Soils.从塞内加尔土壤中分离出的耐盐固氮细菌菌株LCM 4576、LCM 4577和ORS3428的永久基因组序列草图
Genome Announc. 2017 Oct 12;5(41):e01154-17. doi: 10.1128/genomeA.01154-17.
4
Permanent Draft Genome Sequence of the French Bean Symbiont sp. Strain RSm-3 Isolated from the Eastern Himalayan Region of India.从印度东喜马拉雅地区分离出的法国豆共生菌sp. 菌株RSm-3的永久基因组序列草图
Genome Announc. 2017 Apr 13;5(15):e00175-17. doi: 10.1128/genomeA.00175-17.
5
Permanent Draft Genome Sequence of Frankia sp. Strain Allo2, a Salt-Tolerant Nitrogen-Fixing Actinobacterium Isolated from the Root Nodules of Allocasuarina.木麻黄根瘤中分离出的耐盐固氮放线菌弗兰克氏菌属菌株Allo2的永久基因组序列草图
Genome Announc. 2016 May 19;4(3):e00388-16. doi: 10.1128/genomeA.00388-16.
6
Draft Genome Sequence of Frankia sp. Strain CcI6, a Salt-Tolerant Nitrogen-Fixing Actinobacterium Isolated from the Root Nodule of Casuarina cunninghamiana.木麻黄根瘤中分离出的耐盐固氮放线菌弗兰克氏菌CcI6菌株的基因组序列草图
Genome Announc. 2014 Jan 16;2(1):e01205-13. doi: 10.1128/genomeA.01205-13.
7
Draft genome sequence of type strain HBR26 and description of sp. nov.模式菌株HBR26的基因组草图序列及新种描述
Stand Genomic Sci. 2017 Jan 26;12:14. doi: 10.1186/s40793-017-0220-z. eCollection 2017.
8
Permanent Draft Genome sequence for sp strain CcI49, a Nitrogen-Fixing Bacterium Isolated from that Infects .sp菌株CcI49的永久基因组序列草图，该菌株是从感染[具体对象未给出]中分离出的一种固氮细菌。
J Genomics. 2017 Sep 12;5:119-123. doi: 10.7150/jgen.22138. eCollection 2017.
9
Permanent Draft Genome Sequence for Frankia sp. Strain EI5c, a Single-Spore Isolate of a Nitrogen-Fixing Actinobacterium, Isolated from the Root Nodules of Elaeagnus angustifolia.沙棘根瘤中分离得到的固氮放线菌单孢子菌株弗兰克氏菌属菌株EI5c的永久基因组序列草图
Genome Announc. 2016 Jul 7;4(4):e00660-16. doi: 10.1128/genomeA.00660-16.
10
Draft Genome Sequence of Frankia sp. Strain BMG5.23, a Salt-Tolerant Nitrogen-Fixing Actinobacterium Isolated from the Root Nodules of Casuarina glauca Grown in Tunisia.弗兰克氏菌属菌株BMG5.23的基因组序列草图，该菌株是从生长在突尼斯的海滨木麻黄根瘤中分离出的一种耐盐固氮放线菌。
Genome Announc. 2014 May 29;2(3):e00520-14. doi: 10.1128/genomeA.00520-14.
引用本文的文献
1
Nitrogen and phosphorus losses by surface runoff and soil microbial communities in a paddy field with different irrigation and fertilization managements.不同灌溉施肥管理模式下稻田地表径流氮磷损失及土壤微生物群落特征
PLoS One. 2021 Jul 9;16(7):e0254227. doi: 10.1371/journal.pone.0254227. eCollection 2021.
本文引用的文献
1
Evolution and taxonomy of native mesorhizobia nodulating medicinal Glycyrrhiza species in China.中国药用甘草属植物共生中生根瘤菌的进化与分类学研究
Syst Appl Microbiol. 2016 Jun;39(4):260-265. doi: 10.1016/j.syapm.2016.03.009. Epub 2016 Apr 7.
2
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
3
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products.从嵌合MDA产物中组装单细胞基因组和微型宏基因组。
J Comput Biol. 2013 Oct;20(10):714-37. doi: 10.1089/cmb.2013.0084.
4
Biological nitrogen fixation: rates, patterns and ecological controls in terrestrial ecosystems.生物固氮：陆地生态系统中的速率、模式和生态控制。
Philos Trans R Soc Lond B Biol Sci. 2013 May 27;368(1621):20130119. doi: 10.1098/rstb.2013.0119. Print 2013 Jul 5.
5
High-quality draft assemblies of mammalian genomes from massively parallel sequence data.利用大规模平行测序数据生成高质量的哺乳动物基因组草图组装。
Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1513-8. doi: 10.1073/pnas.1017351108. Epub 2010 Dec 27.
6
Rhizobium alkalisoli sp. nov., isolated from Caragana intermedia growing in saline-alkaline soils in the north of China.碱生根瘤菌新种，分离自中国北方生长在盐碱土壤中的中间锦鸡儿。
Int J Syst Evol Microbiol. 2009 Dec;59(Pt 12):3006-11. doi: 10.1099/ijs.0.007237-0. Epub 2009 Jul 30.
7
Shinella kummerowiae sp. nov., a symbiotic bacterium isolated from root nodules of the herbal legume Kummerowia stipulacea.新种库默罗魏斯氏菌，一种从草药豆科植物鸡眼草根瘤中分离出的共生细菌。
Int J Syst Evol Microbiol. 2008 Jun;58(Pt 6):1409-13. doi: 10.1099/ijs.0.65723-0.
8
Genomes of the symbiotic nitrogen-fixing bacteria of legumes.豆科植物共生固氮细菌的基因组。
Plant Physiol. 2007 Jun;144(2):615-22. doi: 10.1104/pp.107.101634.
9
Solexa Ltd.索雷克斯有限公司
Pharmacogenomics. 2004 Jun;5(4):433-8. doi: 10.1517/14622416.5.4.433.
10
Legume symbiotic nitrogen fixation by beta-proteobacteria is widespread in nature.β-变形菌纲细菌进行的豆科植物共生固氮在自然界中广泛存在。
J Bacteriol. 2003 Dec;185(24):7266-72. doi: 10.1128/JB.185.24.7266-7272.2003.
Zotero 插件