Calborean Adrian, Graur Florin, Bintintan Vasile
National Institute for Research and Development of Isotopic and Molecular Technologies (INCDTIM), 67-103 Donat, 400293, Cluj-Napoca, Romania.
Iuliu Haţieganu University of Medicine and Pharmacy, 400012, Cluj-Napoca, Romania.
J Mol Model. 2017 Jun;23(6):181. doi: 10.1007/s00894-017-3350-8. Epub 2017 May 8.
Correlations between DFT and experimental measurements on Zn and Ni chiral meso-(α,β-unsaturated)- porphyrins were performed using Kohn-Sham methodology. The exchange-correlation Becke88-Perdew86 functional was used in conjunction with double-zeta Slater basis sets. An accurate description of the electronic processes depending on the metal ion (Zn, Ni) or ligand (perilaldehyde and myrtenal) was made, confirming experimental results in terms of structural and electronic modifications. Moreover, this theoretical study provides a stronger knowledge and interpretation of the dynamical conformational features of the free base, Zn and Ni structures. Fundamental links between the central metallic atom and distortions of the porphyrinic core and ligands were demonstrated, in agreement with experimental data. We observed that the core in ZnPeriP and ZnMyrtP species is almost flat, in comparison with the Ni porphyrinic core, which appeared much more distorted. The type of distortion differs between PeriP and MyrtP ligands, with a combined saddled-ruffled characteristic with the former and a pronounced ruffled twisting for the latter. Finally, conformational energy barriers were extracted by spinning one of the arms in steps of 20° in a 360° dihedral angle. The resulted conformational barriers for NiPeriP or NiMyrtP are lower in energy than for ZnPeriP or ZnMyrtP, in agreement with experimental data.
使用Kohn-Sham方法对锌和镍手性内消旋-(α,β-不饱和)-卟啉进行了密度泛函理论(DFT)与实验测量之间的相关性研究。交换关联的Becke88-Perdew86泛函与双ζ Slater基组结合使用。对依赖于金属离子(锌、镍)或配体(紫苏醛和桃金娘醛)的电子过程进行了准确描述,在结构和电子修饰方面证实了实验结果。此外,该理论研究对游离碱、锌和镍结构的动态构象特征提供了更深入的认识和解释。证明了中心金属原子与卟啉核和配体畸变之间的基本联系,这与实验数据一致。我们观察到,与镍卟啉核相比,ZnPeriP和ZnMyrtP物种中的核几乎是平的,而镍卟啉核的畸变程度要大得多。PeriP和MyrtP配体的畸变类型不同,前者具有鞍形-褶皱的组合特征,后者具有明显的褶皱扭曲。最后,通过在360°二面角中以2 的步长旋转其中一个臂来提取构象能垒。与实验数据一致,NiPeriP或NiMyrtP的构象能垒在能量上低于ZnPeriP或ZnMyrtP。