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基于假设驱动的昼夜节律单细胞双振荡器数学模型。

Hypothesis driven single cell dual oscillator mathematical model of circadian rhythms.

作者信息

S Shiju, Sriram K

机构信息

Center for Computational Biology, Indraprastha Institute of Information Technology-Delhi, New Delhi, India.

出版信息

PLoS One. 2017 May 9;12(5):e0177197. doi: 10.1371/journal.pone.0177197. eCollection 2017.

Abstract

Molecular mechanisms responsible for 24 h circadian oscillations, entrainment to external cues, encoding of day length and the time-of-day effects have been well studied experimentally. However, it is still debated from the molecular network point of view whether each cell in suprachiasmatic nuclei harbors two molecular oscillators, where one tracks dawn and the other tracks dusk activities. A single cell dual morning and evening oscillator was proposed by Daan et al., based on the molecular network that has two sets of similar non-redundant per1/cry1 and per2/cry2 circadian genes and each can independently maintain their endogenous oscillations. Understanding of dual oscillator dynamics in a single cell at molecular level may provide insight about the circadian mechanisms that encodes day length variations and its response to external zeitgebers. We present here a realistic dual oscillator model of circadian rhythms based on the series of hypotheses proposed by Daan et al., in which they conjectured that the circadian genes per1/cry1 track dawn while per2/cry2 tracks dusk and they together constitute the morning and evening oscillators (dual oscillator). Their hypothesis also provides explanations about the encoding of day length in terms of molecular mechanisms of per/cry expression. We frame a minimal mathematical model with the assumption that per1 acts a morning oscillator and per2 acts as an evening oscillator and to support and interpret this assumption we fit the model to the experimental data of per1/per2 circadian temporal dynamics, phase response curves (PRC's), and entrainment phenomena under various light-dark conditions. We also capture different patterns of splitting phenomena by coupling two single cell dual oscillators with neuropeptides vasoactive intestinal polypeptide (VIP) and arginine vasopressin (AVP) as the coupling agents and provide interpretation for the occurrence of splitting in terms of ME oscillators, though they are not required to explain the morning and evening oscillators. The proposed dual oscillator model based on Daan's hypothesis supports per1 and per2 playing the role of morning and evening oscillators respectively and this may be the first step towards the understanding of the core molecular mechanism responsible for encoding the day length.

摘要

负责24小时昼夜节律振荡、对外部线索的同步化、日长编码以及昼夜效应的分子机制已经在实验中得到了充分研究。然而,从分子网络的角度来看,视交叉上核中的每个细胞是否都含有两个分子振荡器,其中一个追踪黎明活动而另一个追踪黄昏活动,这一点仍存在争议。Daan等人基于具有两组相似的非冗余per1/cry1和per2/cry2昼夜节律基因且每组都能独立维持其内源振荡的分子网络,提出了单个细胞的双早和晚振荡器。在分子水平上理解单个细胞中的双振荡器动态,可能会为编码日长变化及其对外部授时因子反应的昼夜节律机制提供见解。我们在此基于Daan等人提出的一系列假设,提出了一个现实的昼夜节律双振荡器模型,其中他们推测昼夜节律基因per1/cry1追踪黎明,而per2/cry2追踪黄昏,它们共同构成了早和晚振荡器(双振荡器)。他们的假设还从per/cry表达的分子机制方面为日长编码提供了解释。我们构建了一个最小数学模型,假设per1作为早振荡器,per2作为晚振荡器,并为了支持和解释这一假设,将该模型与per1/per2昼夜节律时间动态、相位响应曲线(PRC)以及各种明暗条件下的同步化现象的实验数据进行拟合。我们还通过将两个单细胞双振荡器与神经肽血管活性肠肽(VIP)和精氨酸加压素(AVP)作为耦合剂进行耦合,捕捉到了不同的分裂现象模式,并从ME振荡器的角度为分裂的发生提供了解释,尽管它们并非解释早和晚振荡器所必需的。基于Daan假设提出的双振荡器模型支持per1和per2分别扮演早和晚振荡器的角色,这可能是迈向理解负责编码日长的核心分子机制的第一步。

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