Adler Amos, Lifshitz Ziv, Gordon Michal, Ben-David Debbie, Khabra Efrat, Masarwa Samira, Zion Orit, Schwaber Mitchell J, Carmeli Yehuda
Clinical Microbiology Laboratory, Tel Aviv Sourasky Medical Center, Tel Aviv, Israel.
Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.
J Antimicrob Chemother. 2017 Aug 1;72(8):2219-2224. doi: 10.1093/jac/dkx135.
The KPC-producing Klebsiella pneumoniae (KPC-KP) clonal group (CG) 258 has disseminated throughout Israeli post-acute care hospitals (PACHs). The objectives of the study were (i) to describe the evolution and (ii) to understand the dissemination modes of CG 258 in the PACH system in Israel.
KPC-KP surveillance cultures isolates were collected in Israeli PACHs in three national point-prevalence surveys: 2008, 2011 and 2013. CG 258 was identified by pilv-l PCR. WGS was performed for CG 258 isolates from 9 of 14 PACHs and data extracted for core-genome MLST (cgMLST) and for capsule polysaccharide gene cluster analysis.
The proportional representation of CG 258 among the KPC-KP isolates increased from 72 of 104 isolates (69.2%) in 2008 to 113 of 133 isolates (85%) in 2011 ( P = 0.004 for 2008 versus 2011) and remained high in 2013 [56 of 67 isolates (83.6%)]. All isolates were related to CG 258 clade 2. cgMLST phylogenetic analysis showed relative convergence in the 2008 survey, with increasing diversification in the subsequent surveys. A predominantly institutional dissemination pattern was observed only in centre F from southern Israel. A predominantly regional dissemination pattern was observed in the two PACHs in Jerusalem. The other PACHs were characterized by a combined institutional and generalized pattern, with the majority of isolates clustering within the same PACH and survey.
CG 258 clade 2 has retained its predominance despite increased diversification. Although interchanging of CG 258 strains occurred between most PACHs, local spread is the leading cause of its dissemination.
产肺炎克雷伯菌碳青霉烯酶(KPC)的肺炎克雷伯菌(KPC-KP)克隆群(CG)258已在以色列急性后期护理医院(PACHs)中广泛传播。本研究的目的是:(i)描述CG 258的演变过程,以及(ii)了解其在以色列PACH系统中的传播模式。
在2008年、2011年和2013年的三次全国现患率调查中,收集了以色列PACHs的KPC-KP监测培养分离株。通过pilv-1 PCR鉴定CG 258。对来自14个PACHs中9个的CG 258分离株进行全基因组测序(WGS),并提取数据用于核心基因组多位点序列分型(cgMLST)和荚膜多糖基因簇分析。
CG 258在KPC-KP分离株中的比例从2008年的104株中的72株(69.2%)增加到2011年的133株中的113株(85%)(2008年与2011年相比,P = 0.004),2013年仍保持较高水平[67株中的56株(83.6%)]。所有分离株均与CG 258进化枝2相关。cgMLST系统发育分析显示,2008年的调查中相对趋同,随后的调查中多样性增加。仅在以色列南部的F中心观察到主要为机构内传播模式。在耶路撒冷的两个PACHs中观察到主要为区域传播模式。其他PACHs的特点是机构内传播和广泛传播相结合的模式,大多数分离株在同一PACH和调查中聚集在一起。
尽管多样性增加,CG 258进化枝2仍保持优势。虽然大多数PACHs之间发生了CG 258菌株的交换,但局部传播是其传播的主要原因。