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鉴定由Krm2过表达或Lrp5缺陷诱导的骨质疏松症中与骨折愈合相关的新基因。

Identification of novel genes associated with fracture healing in osteoporosis induced by Krm2 overexpression or Lrp5 deficiency.

作者信息

Gao Feng, Xu Feng, Wu Dankai, Cheng Jieping, Xia Peng

机构信息

Department of Orthopedics, The Second Hospital of Jilin University, Changchun, Jilin 130041, P.R. China.

Department of Spine Surgery, The First Hospital of Jilin University, Changchun, Jilin 130021, P.R. China.

出版信息

Mol Med Rep. 2017 Jun;15(6):3969-3976. doi: 10.3892/mmr.2017.6544. Epub 2017 May 3.

Abstract

The aim of the present study was to screen potential key genes associated with osteoporotic fracture healing. The microarray data from the Gene Expression Omnibus database accession number GSE51686, were downloaded and used to identify differentially expressed genes (DEGs) in fracture callus tissue samples obtained from the femora of type I collagen (Col1a1)‑kringle containing transmembrane protein 2 (Krm2) mice and low density lipoprotein receptor‑related protein 5‑/‑ (Lrp5‑/‑) transgenic mice of osteoporosis compared with those in wild‑type (WT) mice. Enrichment analysis was performed to reveal the DEG function. In addition, protein‑protein interactions (PPIs) of DEGs were analyzed using the Search Tool for the Retrieval of Interacting Genes database. The coexpression associations between hub genes in the PPI network were investigated, and a coexpression network was constructed. A total of 841 DEGs (335 upregulated and 506 downregulated) were identified in the Col1a1‑Krm2 vs. the WT group, and 50 DEGs (16 upregulated and 34 downregulated) were identified in the Lrp5‑/‑ vs. the WT group. The DEGs in Col1a1‑Krm2 mice were primarily associated with immunity and cell adhesion (GO: 0007155) functions. By contrast, the DEGs in Lrp5‑/‑ mice were significantly associated with muscle system process (GO: 0003012) and regulation of transcription (GO: 0006355). In addition, a series of DEGs demonstrated a higher score in the PPI network, and were observed to be coexpressed in the coexpression network, and included thrombospondin 2 (Thbs2), syndecan 2 (Sdc2), FK506 binding protein 10 (Fkbp10), 2'‑5'-oligoadneylate synthase‑like protein 2 (Oasl2), interferon induced protein with tetratricopeptide repeats (Ifit) 1 and Ifit2. Thbs2 and Sdc2 were significantly correlated with extracellular matrix‑receptor interactions. The results suggest that Thbs2, Sdc2, Fkbp10, Oasl2, Ifit1 and Ifit2 may serve important roles during the fracture healing process in osteoporosis. In addition, this is the first study to demonstrate that Sdc2, Fkbp10, Oasl2, Ifit1 and Ifit2 may be associated with osteoporotic fracture healing.

摘要

本研究的目的是筛选与骨质疏松性骨折愈合相关的潜在关键基因。从基因表达综合数据库中下载了登录号为GSE51686的微阵列数据,并用于鉴定从I型胶原蛋白(Col1a1)-含kringle结构域跨膜蛋白2(Krm2)小鼠和低密度脂蛋白受体相关蛋白5基因敲除(Lrp5-/-)骨质疏松转基因小鼠的股骨中获取的骨折痂组织样本与野生型(WT)小鼠相比的差异表达基因(DEG)。进行富集分析以揭示DEG的功能。此外,使用检索相互作用基因数据库的搜索工具分析DEG的蛋白质-蛋白质相互作用(PPI)。研究了PPI网络中枢纽基因之间的共表达关联,并构建了共表达网络。在Col1a1-Krm2与WT组中鉴定出总共841个DEG(335个上调和506个下调),在Lrp5-/-与WT组中鉴定出50个DEG(16个上调和34个下调)。Col1a1-Krm2小鼠中的DEG主要与免疫和细胞粘附(GO: 0007155)功能相关。相比之下,Lrp5-/-小鼠中的DEG与肌肉系统过程(GO: 0003012)和转录调控(GO: 0006355)显著相关。此外,一系列DEG在PPI网络中显示出较高的分数,并在共表达网络中观察到共表达,包括血小板反应蛋白2(Thbs2)、多配体蛋白聚糖2(Sdc2)、FK506结合蛋白10(Fkbp10)、2'-5'-寡腺苷酸合成酶样蛋白2(Oasl2)、干扰素诱导的含四肽重复序列蛋白(Ifit)1和Ifit2。Thbs2和Sdc2与细胞外基质-受体相互作用显著相关。结果表明,Thbs2、Sdc2、Fkbp10、Oasl2、Ifit1和Ifit2可能在骨质疏松性骨折愈合过程中发挥重要作用。此外,这是第一项证明Sdc2、Fkbp10、Oasl2、Ifit1和Ifit2可能与骨质疏松性骨折愈合相关的研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aec4/5436207/26eb66eec884/MMR-15-06-3969-g00.jpg

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