从山药中分离出的CAPREx SY13和CAPREx SY21菌株的基因组序列草图
Draft Genome Sequences of Strains CAPREx SY13 and CAPREx SY21 Isolated from Yams.
作者信息
Honger Joseph, Monson Rita E, Rawlinson Alison, Salmond George P C
机构信息
Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom.
Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom
出版信息
Genome Announc. 2017 May 11;5(19):e00191-17. doi: 10.1128/genomeA.00191-17.
Abstract
strains CAPREx SY13 and CAPREx SY21 were isolated from Ghanaian yams from a London market. The draft genomes suggest that the strains are similar, with genomes of 5,308,004 and 5,157,134 bp and 59.35 and 59.62 G+C%, respectively. The genes necessary for prodigiosin biosynthesis were present in both strains.
摘要
菌株CAPREx SY13和CAPREx SY21是从伦敦市场上的加纳山药中分离出来的。基因组草图表明，这两种菌株相似，基因组大小分别为5,308,004 bp和5,157,134 bp，G+C%分别为59.35%和59.62%。两种菌株中都存在灵菌红素生物合成所需的基因。
相似文献
1
Draft Genome Sequences of Strains CAPREx SY13 and CAPREx SY21 Isolated from Yams.
Genome Announc. 2017 May 11;5(19):e00191-17. doi: 10.1128/genomeA.00191-17.
2
Draft Genome Sequences of Strains CAPREx E7 and CAPREx E2-2.
Genome Announc. 2017 Jun 8;5(23):e00488-17. doi: 10.1128/genomeA.00488-17.
3
Draft genome sequence of a prodigiosin-hyperproducing Serratia marcescens strain isolated from Cairo, Egypt.
G3 (Bethesda). 2021 Sep 27;11(10). doi: 10.1093/g3journal/jkab284.
4
Distribution and Genetic Diversity of Genes Involved in Quorum Sensing and Prodigiosin Biosynthesis in the Complete Genome Sequences of Serratia marcescens.
Genome Biol Evol. 2019 Mar 1;11(3):931-936. doi: 10.1093/gbe/evz046.
5
The Kiss of Death: Serratia marcescens Antibacterial Activities against Staphylococcus aureus Requires Both Prodigiosin Synthesis and Direct Contact.
Microbiol Spectr. 2022 Jun 29;10(3):e0060722. doi: 10.1128/spectrum.00607-22. Epub 2022 Apr 18.
6
Biosynthesis of prodigiosin by white strains of Serratia marcescens isolated from patients.
J Clin Microbiol. 1983 Mar;17(3):476-80. doi: 10.1128/jcm.17.3.476-480.1983.
7
RpoS is a pleiotropic regulator of motility, biofilm formation, exoenzymes, siderophore and prodigiosin production, and trade-off during prolonged stationary phase in Serratia marcescens.
PLoS One. 2020 Jun 2;15(6):e0232549. doi: 10.1371/journal.pone.0232549. eCollection 2020.
8
Genetic Analysis and Immunoelectron Microscopy of Wild and Mutant Strains of the Rubber Tree Endophytic Bacterium Strain ITBB B5-1 Reveal Key Roles of a Macrovesicle in Storage and Secretion of Prodigiosin.
J Agric Food Chem. 2020 May 20;68(20):5606-5615. doi: 10.1021/acs.jafc.0c00078. Epub 2020 Apr 10.
9
The Serratia gene cluster encoding biosynthesis of the red antibiotic, prodigiosin, shows species- and strain-dependent genome context variation.
Microbiology (Reading). 2004 Nov;150(Pt 11):3547-3560. doi: 10.1099/mic.0.27222-0.
10
LysR-Type Transcriptional Regulator MetR Controls Prodigiosin Production, Methionine Biosynthesis, Cell Motility, HO Tolerance, Heat Tolerance, and Exopolysaccharide Synthesis in Serratia marcescens.
Appl Environ Microbiol. 2020 Feb 3;86(4). doi: 10.1128/AEM.02241-19.
本文引用的文献
1
Serratia marcescens, a Phloem-Colonizing, Squash Bug -Transmitted Bacterium: Causal Agent of Cucurbit Yellow Vine Disease.
Plant Dis. 2003 Aug;87(8):937-944. doi: 10.1094/PDIS.2003.87.8.937.
2
Trimmomatic: a flexible trimmer for Illumina sequence data.
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
3
Prokka: rapid prokaryotic genome annotation.
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
4
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
5
Streptomycin-induced expression in Bacillus subtilis of YtnP, a lactonase-homologous protein that inhibits development and streptomycin production in Streptomyces griseus.
Appl Environ Microbiol. 2012 Jan;78(2):599-603. doi: 10.1128/AEM.06992-11. Epub 2011 Nov 18.
6
The two-component system QseEF and the membrane protein QseG link adrenergic and stress sensing to bacterial pathogenesis.
Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5889-94. doi: 10.1073/pnas.0811409106. Epub 2009 Mar 16.
7
The biosynthesis and regulation of bacterial prodiginines.
Nat Rev Microbiol. 2006 Dec;4(12):887-99. doi: 10.1038/nrmicro1531.
8
Isolation and characterization of genes encoding two chitinase enzymes from Serratia marcescens.
EMBO J. 1986 Mar;5(3):467-73. doi: 10.1002/j.1460-2075.1986.tb04235.x.
9
The Serratia gene cluster encoding biosynthesis of the red antibiotic, prodigiosin, shows species- and strain-dependent genome context variation.
Microbiology (Reading). 2004 Nov;150(Pt 11):3547-3560. doi: 10.1099/mic.0.27222-0.
10
Serratia marcescens.
J Med Microbiol. 1997 Nov;46(11):903-12. doi: 10.1099/00222615-46-11-903.
Zotero 插件