• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

在大热波动或大外力下的单分子拉伸实验中的离解率。

Dissociation rates from single-molecule pulling experiments under large thermal fluctuations or large applied force.

机构信息

Statistical Physics Group, Department of Chemical Engineering and Biotechnology, University of Cambridge, CB2 3RA Cambridge, United Kingdom.

Physik-Department, Lehrstuhl für Biophysik, Technische Universität München, 85748 Garching, Germany.

出版信息

Phys Rev E. 2017 Apr;95(4-1):042413. doi: 10.1103/PhysRevE.95.042413. Epub 2017 Apr 28.

DOI:10.1103/PhysRevE.95.042413
PMID:28505809
Abstract

Theories that are used to extract energy-landscape information from single-molecule pulling experiments in biophysics are all invariably based on Kramers' theory of the thermally activated escape rate from a potential well. As is well known, this theory recovers the Arrhenius dependence of the rate on the barrier energy and crucially relies on the assumption that the barrier energy is much larger than k_{B}T (limit of comparatively low thermal fluctuations). As was shown already in Dudko et al. [Phys. Rev. Lett. 96, 108101 (2006)PRLTAO0031-900710.1103/PhysRevLett.96.108101], this approach leads to the unphysical prediction of dissociation time increasing with decreasing binding energy when the latter is lowered to values comparable to k_{B}T (limit of large thermal fluctuations). We propose a theoretical framework (fully supported by numerical simulations) which amends Kramers' theory in this limit and use it to extract the dissociation rate from single-molecule experiments where now predictions are physically meaningful and in agreement with simulations over the whole range of applied forces (binding energies). These results are expected to be relevant for a large number of experimental settings in single-molecule biophysics.

摘要

从生物物理学中单分子牵引实验中提取能量景观信息的理论,都无一例外地基于克拉默斯(Kramers)关于势阱中热激活逃逸率的理论。众所周知,该理论恢复了速率对势垒能的阿仑尼乌斯(Arrhenius)依赖性,并且关键依赖于势垒能远大于 k_BT(相对低的热波动极限)的假设。正如杜德科等人[Phys. Rev. Lett. 96, 108101 (2006)]已经表明的那样,当后者降低到与 k_BT(大的热波动极限)可比的值时,这种方法导致不物理的预测,即解离时间随着结合能的降低而增加。我们提出了一个理论框架(完全由数值模拟支持),在这个极限下修正了克拉默斯理论,并将其用于从单分子实验中提取解离速率,现在的预测在整个应用力(结合能)范围内具有物理意义,并与模拟结果一致。这些结果预计在单分子生物物理学的大量实验设置中具有相关性。

相似文献

1
Dissociation rates from single-molecule pulling experiments under large thermal fluctuations or large applied force.在大热波动或大外力下的单分子拉伸实验中的离解率。
Phys Rev E. 2017 Apr;95(4-1):042413. doi: 10.1103/PhysRevE.95.042413. Epub 2017 Apr 28.
2
Influence of pulling handles and device stiffness in single-molecule force spectroscopy.在单分子力谱学中拉拔手柄和装置硬度的影响。
Phys Chem Chem Phys. 2011 Feb 7;13(5):1836-42. doi: 10.1039/c0cp01528h. Epub 2010 Oct 11.
3
Mechanical Folding and Unfolding of Protein Barnase at the Single-Molecule Level.单分子水平下蛋白质巴那斯酶的机械折叠与去折叠
Biophys J. 2016 Jan 5;110(1):63-74. doi: 10.1016/j.bpj.2015.11.015.
4
Stochastic simulation of single-molecule pulling experiments.单分子拉伸实验的随机模拟
Eur Phys J E Soft Matter. 2014 Oct;37(10):99. doi: 10.1140/epje/i2014-14099-8. Epub 2014 Oct 28.
5
Forced Kramers escape in single-molecule pulling experiments.单分子拉伸实验中的强迫克莱默斯逃逸
J Chem Phys. 2005 Sep 1;123(9):91102. doi: 10.1063/1.2046632.
6
Kinetics of molecular transitions with dynamic disorder in single-molecule pulling experiments.在单分子拉伸实验中具有动态无序的分子转变动力学。
J Chem Phys. 2013 May 28;138(20):204102. doi: 10.1063/1.4801331.
7
Locating the barrier for folding of single molecules under an external force.在外力作用下定位单分子折叠的屏障。
Phys Rev Lett. 2011 Nov 11;107(20):208301. doi: 10.1103/PhysRevLett.107.208301. Epub 2011 Nov 7.
8
Reaction rate theory: what it was, where is it today, and where is it going?反应速率理论:它曾是什么,如今处于何方,又将走向何处?
Chaos. 2005 Jun;15(2):26116. doi: 10.1063/1.1858782.
9
Dynamics of nanoparticle adhesion.纳米颗粒附着的动力学。
J Chem Phys. 2012 Dec 7;137(21):214902. doi: 10.1063/1.4769389.
10
Force spectroscopy of a single artificial biomolecule bond: the Kramers' high-barrier limit holds close to the critical force.单个人工生物分子键的力谱:克莱默斯高势垒极限在临界力附近成立。
J Chem Phys. 2009 Feb 7;130(5):051103. doi: 10.1063/1.3077010.

引用本文的文献

1
Single-molecule evidence of Entropic Pulling by Hsp70 chaperones.单分子证据表明热休克蛋白 70 伴侣通过熵拉力发挥作用。
Nat Commun. 2024 Oct 8;15(1):8604. doi: 10.1038/s41467-024-52674-y.
2
The role of memory-dependent friction and solvent viscosity in isomerization kinetics in viscogenic media.记忆依赖摩擦和溶剂粘度在粘性介质异构化动力学中的作用。
Nat Commun. 2024 May 4;15(1):3761. doi: 10.1038/s41467-024-48016-7.
3
Inferring equilibrium transition rates from nonequilibrium protocols.从非平衡实验方案推断平衡转变速率。
Biophys J. 2023 May 2;122(9):1659-1664. doi: 10.1016/j.bpj.2023.03.031. Epub 2023 Mar 24.
4
Anisotropic Friction in a Ligand-Protein Complex.配体-蛋白质复合物中的各向异性摩擦。
Nano Lett. 2023 May 24;23(10):4111-4119. doi: 10.1021/acs.nanolett.2c04632. Epub 2023 Mar 22.
5
Assessing models of force-dependent unbinding rates via infrequent metadynamics.通过不频繁的元动力学评估力依赖性解缚速率模型。
J Chem Phys. 2022 Mar 28;156(12):125102. doi: 10.1063/5.0081078.