Clark Edward B, Hickinbotham Simon J, Stepney Susan
Department of Electronic Engineering, University of York, York, UK.
Department of Computer Science, University of York, York, UK
J R Soc Interface. 2017 May;14(130). doi: 10.1098/rsif.2016.1033.
We present a novel stringmol-based artificial chemistry system modelled on the universal constructor architecture (UCA) first explored by von Neumann. In a UCA, machines interact with an abstract description of themselves to replicate by copying the abstract description and constructing the machines that the abstract description encodes. DNA-based replication follows this architecture, with DNA being the abstract description, the polymerase being the copier, and the ribosome being the principal machine in expressing what is encoded on the DNA. This architecture is as the machine that defines what the abstract description means is itself encoded on that abstract description. We present a series of experiments with the stringmol UCA that show the evolution of the of genomic material, allowing the concept of semantic closure and transitions between semantically closed states to be elucidated in the light of concrete examples. We present results where, for the first time in an system, simultaneous evolution of the genomic material, copier and constructor of a UCA, giving rise to viable offspring.
我们提出了一种基于字符串分子的新型人工化学系统,该系统以冯·诺依曼首次探索的通用构造器架构(UCA)为模型。在UCA中,机器与其自身的抽象描述进行交互,通过复制抽象描述并构建该抽象描述所编码的机器来进行复制。基于DNA的复制遵循这种架构,其中DNA是抽象描述,聚合酶是复制器,核糖体是表达DNA上所编码内容的主要机器。这种架构之所以如此,是因为定义抽象描述含义的机器本身就编码在该抽象描述上。我们展示了一系列使用字符串分子UCA进行的实验,这些实验展示了基因组物质的进化,从而能够根据具体实例阐明语义封闭的概念以及语义封闭状态之间的转变。我们展示了这样的结果,即在一个人工化学系统中首次实现了UCA的基因组物质、复制器和构造器的同时进化,并产生了可存活的后代。