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氢骨架、流动性与蛋白质结构

Hydrogen skeleton, mobility and protein architecture.

作者信息

Tompa Kalman, Bokor Monika, Han Kyou-Hoon, Tompa Peter

机构信息

Institute for Solid State Physics and Optics; Wigner RCP of the HAS; Budapest, Hungary.

Department of Bioinformatics; University of Science and Technology; Yuseong-gu, Korea.

出版信息

Intrinsically Disord Proteins. 2013 Apr 1;1(1):e25767. doi: 10.4161/idp.25767. eCollection 2013 Jan-Dec.

Abstract

The mobility of the proton-proton radial vectors is introduced as a quantitative measure for the structural dynamics of organic materials, especially protein molecules. As defined for the entire molecule, the hydrogen mobility () is proposed as an "order parameter," which describes the effect of motional narrowing on inter-proton dipole-dipole interactions. satisfies all requirements of an order parameter in the Landau molecular field theory of phase transitions. The wide-line NMR second moments needed to obtain are exactly defined and measurable physical quantities, which are not produced by mathematical fitting and do not carry the limitations and restrictions of any model (theoretical formalism). We first demonstrate the usefulness of on small organic molecules with data taken form the literature. We outline its link with structural and functional characteristics on a range of proteins: provides a model-free parameter based on first principles that can clearly distinguish between globular and intrinsically disordered proteins, and can also provide insight into the behavior of disease-related mutants.

摘要

质子 - 质子径向矢量的迁移率被引入作为有机材料(尤其是蛋白质分子)结构动力学的定量度量。对于整个分子定义的氢迁移率()被提议作为一个“序参量”,它描述了运动窄化对质子间偶极 - 偶极相互作用的影响。在朗道相变分子场理论中,满足序参量的所有要求。获得所需的宽线核磁共振二阶矩是精确界定且可测量的物理量,它们不是通过数学拟合产生的,也不带有任何模型(理论形式)的局限性和限制。我们首先利用文献中的数据证明了在小有机分子上的实用性。我们概述了它与一系列蛋白质的结构和功能特征的联系:基于第一性原理提供了一个无模型参数,该参数可以清晰地区分球状蛋白和内在无序蛋白,还能深入了解疾病相关突变体的行为。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/86ee/5424785/7941a2cad541/kidp-01-01-10925767-g001.jpg

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