Bokor Mónika, Csizmók Veronika, Kovács Dénes, Bánki Péter, Friedrich Peter, Tompa Peter, Tompa Kálmán
Research Institute for Solid State Physics and Optics, Hungarian Academy of Sciences, Budapest, Hungary.
Biophys J. 2005 Mar;88(3):2030-7. doi: 10.1529/biophysj.104.051912. Epub 2004 Dec 21.
Intrinsically unstructured/disordered proteins (IUPs) exist in a disordered and largely solvent-exposed, still functional, structural state under physiological conditions. As their function is often directly linked with structural disorder, understanding their structure-function relationship in detail is a great challenge to structural biology. In particular, their hydration and residual structure, both closely linked with their mechanism of action, require close attention. Here we demonstrate that the hydration of IUPs can be adequately approached by a technique so far unexplored with respect to IUPs, solid-state NMR relaxation measurements. This technique provides quantitative information on various features of hydrate water bound to these proteins. By freezing nonhydrate (bulk) water out, we have been able to measure free induction decays pertaining to protons of bound water from which the amount of hydrate water, its activation energy, and correlation times could be calculated. Thus, for three IUPs, the first inhibitory domain of calpastatin, microtubule-associated protein 2c, and plant dehydrin early responsive to dehydration 10, we demonstrate that they bind a significantly larger amount of water than globular proteins, whereas their suboptimal hydration and relaxation parameters are correlated with their differing modes of function. The theoretical treatment and experimental approach presented in this article may have general utility in characterizing proteins that belong to this novel structural class.
内在无序蛋白(IUPs)在生理条件下处于无序且大部分暴露于溶剂中的状态,但仍具有功能。由于它们的功能通常与结构无序直接相关,详细了解其结构 - 功能关系对结构生物学来说是一项巨大挑战。特别是,它们的水合作用和残余结构都与其作用机制密切相关,需要密切关注。在这里,我们证明IUPs的水合作用可以通过一种迄今为止尚未用于IUPs研究的技术——固态核磁共振弛豫测量来充分研究。该技术提供了与结合到这些蛋白质上的水合物水的各种特征相关的定量信息。通过将非水合(大量)水冷冻出去,我们能够测量与结合水的质子相关的自由感应衰减,由此可以计算出水合物水的量、其活化能和相关时间。因此,对于三种IUPs,即钙蛋白酶抑制蛋白的第一个抑制结构域、微管相关蛋白2c和对脱水早期响应的植物脱水蛋白10,我们证明它们结合的水量比球状蛋白多得多,而它们的次优水合作用和弛豫参数与它们不同的功能模式相关。本文提出的理论处理和实验方法在表征属于这一新型结构类别的蛋白质方面可能具有普遍用途。