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本文引用的文献

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Unfolded proteins and protein folding studied by NMR.通过核磁共振研究未折叠蛋白和蛋白折叠
Chem Rev. 2004 Aug;104(8):3607-22. doi: 10.1021/cr030403s.
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The role of structural disorder in the function of RNA and protein chaperones.结构紊乱在RNA和蛋白质伴侣功能中的作用。
FASEB J. 2004 Aug;18(11):1169-75. doi: 10.1096/fj.04-1584rev.
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Preformed structural elements feature in partner recognition by intrinsically unstructured proteins.预制结构元件在固有无序蛋白质的伴侣识别中发挥作用。
J Mol Biol. 2004 May 14;338(5):1015-26. doi: 10.1016/j.jmb.2004.03.017.
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Prediction and functional analysis of native disorder in proteins from the three kingdoms of life.对来自生命三界的蛋白质中天然无序结构的预测与功能分析。
J Mol Biol. 2004 Mar 26;337(3):635-45. doi: 10.1016/j.jmb.2004.02.002.
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Binding-induced folding transitions in calpastatin subdomains A and C.钙蛋白酶抑制蛋白A和C亚结构域中结合诱导的折叠转变
Protein Sci. 2003 Oct;12(10):2327-36. doi: 10.1110/ps.03138803.
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Ion binding properties of the dehydrin ERD14 are dependent upon phosphorylation.脱水素ERD14的离子结合特性取决于磷酸化作用。
J Biol Chem. 2003 Oct 17;278(42):40882-9. doi: 10.1074/jbc.M307151200. Epub 2003 Aug 13.
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A structural and functional role for 11-mer repeats in alpha-synuclein and other exchangeable lipid binding proteins.11聚体重复序列在α-突触核蛋白及其他可交换脂质结合蛋白中的结构和功能作用。
J Mol Biol. 2003 Jun 13;329(4):763-78. doi: 10.1016/s0022-2836(03)00520-5.
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A structural model for the inhibition of calpain by calpastatin: crystal structures of the native domain VI of calpain and its complexes with calpastatin peptide and a small molecule inhibitor.钙蛋白酶抑制蛋白对钙蛋白酶抑制作用的结构模型:钙蛋白酶天然结构域VI及其与钙蛋白酶抑制蛋白肽和小分子抑制剂复合物的晶体结构
J Mol Biol. 2003 Apr 18;328(1):131-46. doi: 10.1016/s0022-2836(03)00274-2.
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Transition from natively unfolded to folded state induced by desiccation in an anhydrobiotic nematode protein.一种耐脱水线虫蛋白中由干燥诱导的从天然未折叠状态到折叠状态的转变。
J Biol Chem. 2003 Apr 11;278(15):12977-84. doi: 10.1074/jbc.M212007200. Epub 2003 Feb 4.
10
The binding of maize DHN1 to lipid vesicles. Gain of structure and lipid specificity.玉米脱水素1与脂质囊泡的结合。结构的获得与脂质特异性。
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关于内在无序蛋白质水合层的核磁共振弛豫研究。

NMR relaxation studies on the hydrate layer of intrinsically unstructured proteins.

作者信息

Bokor Mónika, Csizmók Veronika, Kovács Dénes, Bánki Péter, Friedrich Peter, Tompa Peter, Tompa Kálmán

机构信息

Research Institute for Solid State Physics and Optics, Hungarian Academy of Sciences, Budapest, Hungary.

出版信息

Biophys J. 2005 Mar;88(3):2030-7. doi: 10.1529/biophysj.104.051912. Epub 2004 Dec 21.

DOI:10.1529/biophysj.104.051912
PMID:15613629
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1305255/
Abstract

Intrinsically unstructured/disordered proteins (IUPs) exist in a disordered and largely solvent-exposed, still functional, structural state under physiological conditions. As their function is often directly linked with structural disorder, understanding their structure-function relationship in detail is a great challenge to structural biology. In particular, their hydration and residual structure, both closely linked with their mechanism of action, require close attention. Here we demonstrate that the hydration of IUPs can be adequately approached by a technique so far unexplored with respect to IUPs, solid-state NMR relaxation measurements. This technique provides quantitative information on various features of hydrate water bound to these proteins. By freezing nonhydrate (bulk) water out, we have been able to measure free induction decays pertaining to protons of bound water from which the amount of hydrate water, its activation energy, and correlation times could be calculated. Thus, for three IUPs, the first inhibitory domain of calpastatin, microtubule-associated protein 2c, and plant dehydrin early responsive to dehydration 10, we demonstrate that they bind a significantly larger amount of water than globular proteins, whereas their suboptimal hydration and relaxation parameters are correlated with their differing modes of function. The theoretical treatment and experimental approach presented in this article may have general utility in characterizing proteins that belong to this novel structural class.

摘要

内在无序蛋白(IUPs)在生理条件下处于无序且大部分暴露于溶剂中的状态,但仍具有功能。由于它们的功能通常与结构无序直接相关,详细了解其结构 - 功能关系对结构生物学来说是一项巨大挑战。特别是,它们的水合作用和残余结构都与其作用机制密切相关,需要密切关注。在这里,我们证明IUPs的水合作用可以通过一种迄今为止尚未用于IUPs研究的技术——固态核磁共振弛豫测量来充分研究。该技术提供了与结合到这些蛋白质上的水合物水的各种特征相关的定量信息。通过将非水合(大量)水冷冻出去,我们能够测量与结合水的质子相关的自由感应衰减,由此可以计算出水合物水的量、其活化能和相关时间。因此,对于三种IUPs,即钙蛋白酶抑制蛋白的第一个抑制结构域、微管相关蛋白2c和对脱水早期响应的植物脱水蛋白10,我们证明它们结合的水量比球状蛋白多得多,而它们的次优水合作用和弛豫参数与它们不同的功能模式相关。本文提出的理论处理和实验方法在表征属于这一新型结构类别的蛋白质方面可能具有普遍用途。