National Institute for Nuclear Physics (INFN), Largo Bruno Pontecorvo 3, 56127 Pisa, Italy.
National Institute for Nuclear Physics (INFN), Largo Bruno Pontecorvo 3, 56127 Pisa, Italy.
Comput Biol Med. 2017 Aug 1;87:1-7. doi: 10.1016/j.compbiomed.2017.05.017. Epub 2017 May 17.
The complexity and heterogeneity of Autism Spectrum Disorders (ASD) require the implementation of dedicated analysis techniques to obtain the maximum from the interrelationship among many variables that describe affected individuals, spanning from clinical phenotypic characterization and genetic profile to structural and functional brain images. The ARIANNA project has developed a collaborative interdisciplinary research environment that is easily accessible to the community of researchers working on ASD (https://arianna.pi.infn.it). The main goals of the project are: to analyze neuroimaging data acquired in multiple sites with multivariate approaches based on machine learning; to detect structural and functional brain characteristics that allow the distinguishing of individuals with ASD from control subjects; to identify neuroimaging-based criteria to stratify the population with ASD to support the future development of personalized treatments. Secure data handling and storage are guaranteed within the project, as well as the access to fast grid/cloud-based computational resources. This paper outlines the web-based architecture, the computing infrastructure and the collaborative analysis workflows at the basis of the ARIANNA interdisciplinary working environment. It also demonstrates the full functionality of the research platform. The availability of this innovative working environment for analyzing clinical and neuroimaging information of individuals with ASD is expected to support researchers in disentangling complex data thus facilitating their interpretation.
自闭症谱系障碍(ASD)的复杂性和异质性需要实施专门的分析技术,以充分利用描述患者的众多变量之间的相互关系,这些变量涵盖了从临床表型特征和遗传特征到结构和功能脑图像。ARIANNA 项目开发了一个协作式跨学科研究环境,便于从事 ASD 研究的研究人员(https://arianna.pi.infn.it)使用。该项目的主要目标是:使用基于机器学习的多元方法分析在多个站点采集的神经影像学数据;检测允许将 ASD 患者与对照者区分开来的结构和功能脑特征;确定基于神经影像学的标准对 ASD 人群进行分层,以支持个性化治疗的未来发展。该项目保证了数据的安全处理和存储,并提供了对快速网格/云基础计算资源的访问。本文概述了 ARIANNA 跨学科工作环境的基于网络的架构、计算基础设施和协作分析工作流程。它还展示了研究平台的全部功能。预计这个用于分析 ASD 患者临床和神经影像学信息的创新工作环境的可用性将支持研究人员梳理复杂数据,从而促进对其的解释。