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趋磁细菌的多样性、生态学及其生物矿化作用。

Diversity and ecology of and biomineralization by magnetotactic bacteria.

机构信息

Key Laboratory of Earth and Planetary Physics, Institute of Geology and Geophysics, Chinese Academy of Sciences, Beijing, 100029, China.

France-China Bio-Mineralization and Nano-Structures Laboratory, Chinese Academy of Sciences, Beijing, 100029, China.

出版信息

Environ Microbiol Rep. 2017 Aug;9(4):345-356. doi: 10.1111/1758-2229.12550. Epub 2017 Jun 27.

Abstract

Magnetotactic bacteria (MTB) biomineralize intracellular, membrane-bounded crystals of magnetite (Fe O ) and/or greigite (Fe S ) called magnetosomes. MTB play important roles in the geochemical cycling of iron, sulfur, nitrogen and carbon. Significantly, they also represent an intriguing model system not just for the study of microbial biomineralization but also for magnetoreception, prokaryotic organelle formation and microbial biogeography. Here we review current knowledge on the ecology of and biomineralization by MTB, with an emphasis on more recent reports of unexpected ecological and phylogenetic findings regarding MTB. In this study, we conducted a search of public metagenomic databases and identified six novel magnetosome gene cluster-containing genomic fragments affiliated with the Deltaproteobacteria and Gammaproteobacteria classes of the Proteobacteria phylum, the Nitrospirae phylum and the Planctomycetes phylum from the deep subseafloor, marine oxygen minimum zone, groundwater biofilm and estuary sediment, thereby extending our knowledge on the diversity and distribution of MTB as well deriving important information as to their ecophysiology. We point out that the increasing availability of sequence data will facilitate researchers to systematically explore the ecology and biomineralization of MTB even further.

摘要

趋磁细菌(MTB)生物矿化细胞内的、膜结合的磁铁矿(Fe3O4)和/或硫铁矿(FeS)晶体,称为磁小体。MTB 在铁、硫、氮和碳的地球化学循环中起着重要作用。重要的是,它们不仅代表了一个有趣的微生物生物矿化模型系统,也代表了磁受体、原核细胞器形成和微生物生物地理学的研究模型。在这里,我们综述了趋磁细菌的生态学和生物矿化作用的现有知识,重点介绍了关于趋磁细菌的生态学和系统发育的一些意想不到的新发现。在本研究中,我们对公共宏基因组数据库进行了搜索,鉴定了来自深海海底、海洋缺氧区、地下水生物膜和河口沉积物的 6 个新的含有磁小体基因簇的基因组片段,这些片段与变形菌门的 Delta 变形菌纲和 Gamma 变形菌纲、硝化螺旋菌门和浮霉菌门有关,从而扩展了我们对趋磁细菌多样性和分布的认识,并获得了有关其生态生理学的重要信息。我们指出,随着序列数据的不断增加,将有助于研究人员更系统地探索趋磁细菌的生态学和生物矿化作用。

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