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探寻系统发育树形状中的进化模式。

SEARCHING FOR EVOLUTIONARY PATTERNS IN THE SHAPE OF A PHYLOGENETIC TREE.

作者信息

Kirxpatrick Mark, Slatkin Montgomery

机构信息

Department of Zoology, University of Texas, Austin, Texas, 78712.

Department of Integrative Biology, University of California, Berkeley, California, 94720.

出版信息

Evolution. 1993 Aug;47(4):1171-1181. doi: 10.1111/j.1558-5646.1993.tb02144.x.

Abstract

If all species in a clade are equally likely to speciate or become extinct, then highly symmetric and highly asymmetric phylogenetic trees are unlikely to result. Variation between species in speciation and extinction rates can cause excessive asymmetry. We developed six non-parametric statistical tests that test for nonrandom patterns of branching in any bifurcating tree. The tests are demonstrated by applying them to two published phylogenies for genera of beetles. Comparison of the power of the six statistics under a simple model of biased speciation suggests which of them may be most useful for detecting nonrandom tree shapes.

摘要

如果一个进化枝中的所有物种形成新物种或灭绝的可能性相同,那么极对称和极不对称的系统发育树就不太可能出现。物种在物种形成和灭绝速率上的差异会导致过度的不对称。我们开发了六种非参数统计检验方法,用于检验任何二叉树中分支的非随机模式。通过将这些检验方法应用于已发表的两个甲虫属系统发育树来进行演示。在一个简单的偏向物种形成模型下对这六种统计量的功效进行比较,表明其中哪些可能对检测非随机树形最有用。

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