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将大分子X射线衍射数据与图形用户界面iMosflm相结合。

Integrating macromolecular X-ray diffraction data with the graphical user interface iMosflm.

作者信息

Powell Harold R, Battye T Geoff G, Kontogiannis Luke, Johnson Owen, Leslie Andrew G W

机构信息

MRC Laboratory of Molecular Biology, Cambridge, UK.

出版信息

Nat Protoc. 2017 Jul;12(7):1310-1325. doi: 10.1038/nprot.2017.037. Epub 2017 Jun 1.

DOI:10.1038/nprot.2017.037
PMID:28569763
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5562275/
Abstract

X-ray crystallography is the predominant source of structural information for biological macromolecules, providing fundamental insights into biological function. The availability of robust and user-friendly software to process the collected X-ray diffraction images makes the technique accessible to a wider range of scientists. iMosflm/MOSFLM (http://www.mrc-lmb.cam.ac.uk/harry/imosflm) is a software package designed to achieve this goal. The graphical user interface (GUI) version of MOSFLM (called iMosflm) is designed to guide inexperienced users through the steps of data integration, while retaining powerful features for more experienced users. Images from almost all commercially available X-ray detectors can be handled using this software. Although the program uses only 2D profile fitting, it can readily integrate data collected in the 'fine phi-slicing' mode (in which the rotation angle per image is less than the crystal mosaic spread by a factor of at least 2), which is commonly used with modern very fast readout detectors. The GUI provides real-time feedback on the success of the indexing step and the progress of data processing. This feedback includes the ability to monitor detector and crystal parameter refinement and to display the average spot shape in different regions of the detector. Data scaling and merging tasks can be initiated directly from the interface. Using this protocol, a data set of 360 images with ∼2,000 reflections per image can be processed in ∼4 min.

摘要

X射线晶体学是获取生物大分子结构信息的主要来源,能为生物功能提供基本见解。有了强大且用户友好的软件来处理收集到的X射线衍射图像,该技术可供更广泛的科学家使用。iMosflm/MOSFLM(http://www.mrc-lmb.cam.ac.uk/harry/imosflm)就是为实现这一目标而设计的软件包。MOSFLM的图形用户界面(GUI)版本(称为iMosflm)旨在引导缺乏经验的用户完成数据整合步骤,同时为经验更丰富的用户保留强大功能。几乎所有市售X射线探测器的图像都可以用该软件处理。虽然该程序仅使用二维轮廓拟合,但它可以轻松整合以“精细φ切片”模式收集的数据(其中每张图像的旋转角度小于晶体镶嵌扩展因子至少2倍),这种模式常用于现代超快速读出探测器。GUI会实时反馈索引步骤的成功情况和数据处理进度。此反馈包括监测探测器和晶体参数优化以及在探测器不同区域显示平均光斑形状的能力。数据缩放和合并任务可以直接从界面启动。使用此协议,一个包含360张图像、每张图像约有2000个反射的数据集大约可以在4分钟内处理完毕。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2c88/5562275/39e615175a9a/emss-73722-f005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2c88/5562275/e1d01da52d8c/emss-73722-f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2c88/5562275/74f3080b70bf/emss-73722-f002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2c88/5562275/ec2370cb5f75/emss-73722-f003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2c88/5562275/43e9c2a48a6f/emss-73722-f004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2c88/5562275/39e615175a9a/emss-73722-f005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2c88/5562275/e1d01da52d8c/emss-73722-f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2c88/5562275/74f3080b70bf/emss-73722-f002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2c88/5562275/ec2370cb5f75/emss-73722-f003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2c88/5562275/43e9c2a48a6f/emss-73722-f004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2c88/5562275/39e615175a9a/emss-73722-f005.jpg

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