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不动杆菌属DL-2中AfeH的结晶及初步X射线晶体学研究。

Crystallization and preliminary X-ray crystallographic studies of AfeH from Acimetobacter sp. DL-2.

作者信息

Tang Huiling, Zhang XiaoRan, Duan Yajuan, Huang Yan

机构信息

Department of Scientific Research Office, Jiangsu Food and Pharmaceutical Science College, Huai'an 223003, People's Republic of China.

Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture and Rural Affairs, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, People's Republic of China.

出版信息

Acta Crystallogr F Struct Biol Commun. 2025 Jan 1;81(Pt 1):30-34. doi: 10.1107/S2053230X24012275.

DOI:10.1107/S2053230X24012275
PMID:39718026
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11701925/
Abstract

Fenoxaprop-P-ethyl (FE) is widely applied as a post-emergence aryloxyphenoxy propionate (AOPP) herbicide in agriculture. A novel FE hydrolase esterase from Acinetobacter sp. DL-2 (AfeH) was identified which belongs to the family IV carboxylesterases and shows less than 30% identity to other reported homologues with known structure. In order to understand the catalytic mechanism, recombinant AfeH was prepared in Escherichia coli and crystallized using the sitting-drop vapor-diffusion method. X-ray diffraction data were collected to 1.9 Å resolution. The crystal belonged to space group P121, with unit-cell parameters a = 84.27, b = 46.74, c = 258.68 Å. The Matthews coefficient (V) was calculated to be 2.43 Å Da, which corresponds to a solvent content of 49.4%, suggesting the presence of three monomers in the crystallographic asymmetric unit. The crystal was assessed to be suitable for further structural determination, which is currently in progress.

摘要

精恶唑禾草灵(FE)作为一种芽后芳氧苯氧丙酸酯(AOPP)类除草剂在农业中被广泛应用。从不动杆菌属DL-2菌株中鉴定出一种新型的FE水解酶酯酶(AfeH),它属于IV型羧酸酯酶家族,与其他已报道的具有已知结构的同源物的同一性低于30%。为了了解其催化机制,在大肠杆菌中制备了重组AfeH,并采用坐滴气相扩散法进行结晶。收集到了分辨率为1.9 Å的X射线衍射数据。该晶体属于空间群P121,晶胞参数a = 84.27、b = 46.74、c = 258.68 Å。计算得到的马修斯系数(V)为2.43 Å Da,对应于49.4%的溶剂含量,表明在晶体学不对称单元中存在三个单体。该晶体被评估适合进行进一步的结构测定,目前相关工作正在进行中。

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本文引用的文献

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Efficient Biodegradation of Multiple Aryloxyphenoxypropionate Herbicides by sp. Z-1 and the Proposed Degradation Mechanism.高效降解多种芳氧苯氧丙酸类除草剂的 sp. Z-1 及其提出的降解机制。
J Agric Food Chem. 2024 Jul 31;72(30):16877-16888. doi: 10.1021/acs.jafc.4c02786. Epub 2024 Jul 22.
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Mechanism and Structural Insights Into a Novel Esterase, E53, Isolated From .从……中分离出的新型酯酶E53的作用机制及结构解析
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Biochemical and Structural Characterization of a novel thermophilic esterase EstD11 provide catalytic insights for the HSL family.新型嗜热酯酶EstD11的生化与结构表征为水解酶家族提供了催化见解。
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Structural and Biochemical Characterization of a Cold-Active PMGL3 Esterase with Unusual Oligomeric Structure.具有异常寡聚结构的冷活性 PMGL3 酯酶的结构和生化特性研究
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Crystal structure of chloramphenicol-metabolizing enzyme EstDL136 from a metagenome.从宏基因组中提取的氯霉素代谢酶 EstDL136 的晶体结构。
PLoS One. 2019 Jan 15;14(1):e0210298. doi: 10.1371/journal.pone.0210298. eCollection 2019.
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Integrating macromolecular X-ray diffraction data with the graphical user interface iMosflm.将大分子X射线衍射数据与图形用户界面iMosflm相结合。
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Identification and characterization of a novel carboxylesterase (FpbH) that hydrolyzes aryloxyphenoxypropionate herbicides.一种可水解芳氧苯氧丙酸类除草剂的新型羧酸酯酶(FpbH)的鉴定与特性分析
Biotechnol Lett. 2017 Apr;39(4):553-560. doi: 10.1007/s10529-016-2276-z. Epub 2017 Jan 5.
8
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Structural insights into the substrate specificity of two esterases from the thermophilic Rhizomucor miehei.嗜热米黑根毛霉两种酯酶底物特异性的结构解析
J Lipid Res. 2015 Aug;56(8):1616-24. doi: 10.1194/jlr.M060673. Epub 2015 Jun 23.
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