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单颗粒电子显微镜在基于结构的抑制剂设计中的潜在应用。

The potential use of single-particle electron microscopy as a tool for structure-based inhibitor design.

机构信息

School of Biomedical Sciences and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, England.

School of Chemistry and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, England.

出版信息

Acta Crystallogr D Struct Biol. 2017 Jun 1;73(Pt 6):534-540. doi: 10.1107/S2059798317004077. Epub 2017 Apr 20.

DOI:10.1107/S2059798317004077
PMID:28580915
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5458495/
Abstract

Recent developments in electron microscopy (EM) have led to a step change in our ability to solve the structures of previously intractable systems, especially membrane proteins and large protein complexes. This has provided new opportunities in the field of structure-based drug design, with a number of high-profile publications resolving the binding sites of small molecules and peptide inhibitors. There are a number of advantages of EM over the more traditional X-ray crystallographic approach, such as resolving different conformational states and permitting the dynamics of a system to be better resolved when not constrained by a crystal lattice. There are still significant challenges to be overcome using an EM approach, not least the speed of structure determination, difficulties with low-occupancy ligands and the modest resolution that is available. However, with the anticipated developments in the field of EM, the potential of EM to become a key tool for structure-based drug design, often complementing X-ray and NMR studies, seems promising.

摘要

近年来电子显微镜(EM)技术的发展使得我们解决以前难以处理的系统结构的能力有了质的飞跃,特别是膜蛋白和大型蛋白复合物。这为基于结构的药物设计领域提供了新的机会,有许多备受瞩目的出版物解决了小分子和肽抑制剂的结合位点。与更传统的 X 射线晶体学方法相比,EM 具有许多优势,例如可以解析不同的构象状态,并且当不受晶格约束时,可以更好地解析系统的动力学。使用 EM 方法仍然存在重大挑战,不仅是结构确定的速度,还有低占有率配体的困难和可用的中等分辨率。然而,随着 EM 领域的预期发展,EM 成为基于结构的药物设计的关键工具的潜力似乎很有希望,通常可以补充 X 射线和 NMR 研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6eba/5458495/1b5af5c82605/d-73-00534-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6eba/5458495/8019529bfba3/d-73-00534-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6eba/5458495/cd6df1a81efe/d-73-00534-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6eba/5458495/1b5af5c82605/d-73-00534-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6eba/5458495/8019529bfba3/d-73-00534-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6eba/5458495/cd6df1a81efe/d-73-00534-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6eba/5458495/1b5af5c82605/d-73-00534-fig3.jpg

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本文引用的文献

1
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Protein Sci. 2017 Jan;26(1):122-129. doi: 10.1002/pro.3060. Epub 2016 Oct 15.
2
3.9 Å structure of the nucleosome core particle determined by phase-plate cryo-EM.通过相板冷冻电镜确定的核小体核心颗粒的3.9埃结构。
Nucleic Acids Res. 2016 Sep 30;44(17):8013-9. doi: 10.1093/nar/gkw708. Epub 2016 Aug 25.
3
Twenty years on: the impact of fragments on drug discovery.二十年后:碎片对药物发现的影响。
一种基于深度学习的冷冻电子显微镜中粒子修剪方法。
IUCrJ. 2018 Oct 30;5(Pt 6):854-865. doi: 10.1107/S2052252518014392. eCollection 2018 Nov 1.
4
X-ray and cryo-EM structures of inhibitor-bound cytochrome complexes for structure-based drug discovery.用于基于结构的药物发现的抑制剂结合细胞色素复合物的X射线和冷冻电镜结构。
IUCrJ. 2018 Feb 20;5(Pt 2):200-210. doi: 10.1107/S2052252518001616. eCollection 2018 Mar 1.
5
Crystallography and the development of therapeutic medicines.晶体学与治疗药物的研发
IUCrJ. 2018 Feb 26;5(Pt 2):118-119. doi: 10.1107/S2052252518002555. eCollection 2018 Mar 1.
6
Elucidating the structural basis for differing enzyme inhibitor potency by cryo-EM.通过低温电镜阐明结构基础,解释不同酶抑制剂效力的差异。
Proc Natl Acad Sci U S A. 2018 Feb 20;115(8):1795-1800. doi: 10.1073/pnas.1708839115. Epub 2018 Feb 6.
7
New developments in crystallography: exploring its technology, methods and scope in the molecular biosciences.晶体学的新进展:探索其在分子生物科学中的技术、方法及应用范围。
Biosci Rep. 2017 Jul 4;37(4). doi: 10.1042/BSR20170204. Print 2017 Aug 31.
Nat Rev Drug Discov. 2016 Sep;15(9):605-619. doi: 10.1038/nrd.2016.109. Epub 2016 Jul 15.
4
TRPV1 structures in nanodiscs reveal mechanisms of ligand and lipid action.纳米圆盘内的TRPV1结构揭示了配体和脂质的作用机制。
Nature. 2016 Jun 16;534(7607):347-51. doi: 10.1038/nature17964. Epub 2016 May 18.
5
A method for detergent-free isolation of membrane proteins in their local lipid environment.无去污剂条件下在局部脂质环境中分离膜蛋白的方法。
Nat Protoc. 2016 Jul;11(7):1149-62. doi: 10.1038/nprot.2016.070. Epub 2016 Jun 2.
6
Breaking Cryo-EM Resolution Barriers to Facilitate Drug Discovery.突破冷冻电镜分辨率障碍以促进药物发现。
Cell. 2016 Jun 16;165(7):1698-1707. doi: 10.1016/j.cell.2016.05.040. Epub 2016 May 26.
7
The development of cryo-EM into a mainstream structural biology technique.冷冻电镜发展成为一种主流的结构生物学技术。
Nat Methods. 2016 Jan;13(1):24-7. doi: 10.1038/nmeth.3694.
8
A saposin-lipoprotein nanoparticle system for membrane proteins.一种用于膜蛋白的鞘脂激活蛋白-脂蛋白纳米颗粒系统。
Nat Methods. 2016 Apr;13(4):345-51. doi: 10.1038/nmeth.3801. Epub 2016 Mar 7.
9
Docking Screens for Novel Ligands Conferring New Biology.用于赋予新生物学特性的新型配体的对接筛选
J Med Chem. 2016 May 12;59(9):4103-20. doi: 10.1021/acs.jmedchem.5b02008. Epub 2016 Mar 15.
10
Continuous changes in structure mapped by manifold embedding of single-particle data in cryo-EM.通过冷冻电镜中单颗粒数据的流形嵌入映射结构的连续变化。
Methods. 2016 May 1;100:61-7. doi: 10.1016/j.ymeth.2016.02.007. Epub 2016 Feb 13.