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放热不是增强酶扩散的必要条件。

Exothermicity Is Not a Necessary Condition for Enhanced Diffusion of Enzymes.

机构信息

Rudolf Peierls Centre for Theoretical Physics, University of Oxford , Oxford OX1 3NP, United Kingdom.

出版信息

Nano Lett. 2017 Jul 12;17(7):4415-4420. doi: 10.1021/acs.nanolett.7b01502. Epub 2017 Jun 14.

Abstract

Recent experiments have revealed that the diffusivity of exothermic and fast enzymes is enhanced when they are catalytically active, and different physical mechanisms have been explored and quantified to account for this observation. We perform measurements on the endothermic and relatively slow enzyme aldolase, which also shows substrate-induced enhanced diffusion. We propose a new physical paradigm, which reveals that the diffusion coefficient of a model enzyme hydrodynamically coupled to its environment increases significantly when undergoing changes in conformational fluctuations in a substrate concentration dependent manner, and is independent of the overall turnover rate of the underlying enzymatic reaction. Our results show that substrate-induced enhanced diffusion of enzyme molecules can be explained within an equilibrium picture and that the exothermicity of the catalyzed reaction is not a necessary condition for the observation of this phenomenon.

摘要

最近的实验表明,当放热和快速酶具有催化活性时,其扩散率会增强,并且已经探索和量化了不同的物理机制来解释这一观察结果。我们对吸热且相对较慢的酶醛缩酶进行了测量,该酶也表现出底物诱导的扩散增强。我们提出了一个新的物理范例,该范例表明,当模型酶的构象波动发生变化时,与环境发生水动力耦合的扩散系数会显著增加,并且与基础酶反应的总周转率无关。我们的结果表明,底物诱导的酶分子扩散增强可以在平衡图像内得到解释,并且催化反应的放热不是观察到这种现象的必要条件。

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