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杜兴氏肌营养不良症(DMD)基因中正常和异常的前体信使核糖核酸(pre-mRNA)加工过程

Normal and altered pre-mRNA processing in the DMD gene.

作者信息

Tuffery-Giraud Sylvie, Miro Julie, Koenig Michel, Claustres Mireille

机构信息

Laboratoire de Génétique de Maladies Rares (LGMR, EA7402), University of Montpellier, Institut Universitaire de Recherche Clinique (IURC), 641 av du Doyen G. Giraud, Montpellier, Cedex 5, 34093, France.

Laboratoire de Génétique Moléculaire, CHU Montpellier, Montpellier, France.

出版信息

Hum Genet. 2017 Sep;136(9):1155-1172. doi: 10.1007/s00439-017-1820-9. Epub 2017 Jun 9.

DOI:10.1007/s00439-017-1820-9
PMID:28597072
Abstract

Splicing of pre-mRNA is a crucial regulatory stage in the pathway of gene expression controlled by multiple post- and co-transcriptional mechanisms. The large Duchenne muscular dystrophy gene encoding the protein dystrophin provides a striking example of the complexity of human pre-mRNAs. In this review, we summarize the current state of knowledge about canonical and non-canonical splicing in the DMD pre-mRNA, with a focus on mechanisms that take place in the full-length transcript isoform expressed in human skeletal muscle. In particular, we highlight recent work demonstrating that multi-step events are required for long DMD intron removal. The role of temporary intron retention in the occurrence of alternative splicing events is also discussed. Even though the proportion of splicing mutations is lower than reported in other genes, a great diversity of splicing defects linked to point mutations, but also large genomic rearrangements are observed in the DMD gene. We provide an overview of the molecular mechanisms underlying aberrant splicing in patients with Duchenne or Becker muscular dystrophy, and we also detail how alternative splicing can serve as a disease modifier in patients by changing the outcome of the primary defect.

摘要

前体mRNA的剪接是由多种转录后和共转录机制控制的基因表达途径中的一个关键调控阶段。编码抗肌萎缩蛋白的大型杜兴氏肌营养不良基因是人类前体mRNA复杂性的一个显著例子。在这篇综述中,我们总结了关于杜兴肌营养不良症(DMD)前体mRNA中典型和非典型剪接的当前知识状态,重点关注在人类骨骼肌中表达的全长转录本异构体中发生的机制。特别是,我们强调了最近的研究工作,这些研究表明去除长DMD内含子需要多步骤事件。还讨论了临时内含子保留在可变剪接事件发生中的作用。尽管剪接突变的比例低于其他基因的报道,但在DMD基因中观察到与点突变相关的多种剪接缺陷,以及大型基因组重排。我们概述了杜兴或贝克型肌营养不良症患者异常剪接的分子机制,还详细阐述了可变剪接如何通过改变原发性缺陷的结果而成为患者的疾病修饰因子。

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Normal and altered pre-mRNA processing in the DMD gene.杜兴氏肌营养不良症(DMD)基因中正常和异常的前体信使核糖核酸(pre-mRNA)加工过程
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2
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When a mid-intronic variation of DMD gene creates an ESE site.当DMD基因的内含子中部变异产生一个外显子剪接增强子(ESE)位点时。
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Incidental finding of a exons 48-55 deletion during prenatal diagnosis.产前诊断时偶然发现外显子48 - 55缺失。
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本文引用的文献

1
Targeted RNA-Seq profiling of splicing pattern in the DMD gene: exons are mostly constitutively spliced in human skeletal muscle.靶向 RNA-Seq 分析 DMD 基因的剪接模式:人类骨骼肌中的外显子主要是组成性剪接的。
Sci Rep. 2017 Jan 3;7:39094. doi: 10.1038/srep39094.
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Exon skipping: a first in class strategy for Duchenne muscular dystrophy.外显子跳跃:杜氏肌营养不良症的首创治疗策略
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Perfect timing: splicing and transcription rates in living cells.
杜兴肌营养不良症(DMD)基因中外显子45至55的缺失:从治疗角度到体外模型
Skelet Muscle. 2024 Oct 1;14(1):21. doi: 10.1186/s13395-024-00353-3.
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Splice modulation strategy applied to deep intronic variants in causing recessive dystrophic epidermolysis bullosa.剪接调控策略应用于导致隐性营养不良型大疱性表皮松解症的深内含子变异。
Proc Natl Acad Sci U S A. 2024 Aug 27;121(35):e2401781121. doi: 10.1073/pnas.2401781121. Epub 2024 Aug 19.
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A novel deep intronic variant introduce pseudoexon in Becker muscular dystrophy: A case report.一种新型的深度内含子变异在贝克肌营养不良症中引入假外显子:一例报告。
Heliyon. 2024 Mar 19;10(6):e28020. doi: 10.1016/j.heliyon.2024.e28020. eCollection 2024 Mar 30.
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Dystrophin- and Utrophin-Based Therapeutic Approaches for Treatment of Duchenne Muscular Dystrophy: A Comparative Review.基于抗肌萎缩蛋白和乌司他丁的治疗方法治疗杜氏肌营养不良症:比较综述。
BioDrugs. 2024 Jan;38(1):95-119. doi: 10.1007/s40259-023-00632-3. Epub 2023 Nov 2.
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SpliceAI-visual: a free online tool to improve SpliceAI splicing variant interpretation.SpliceAI-visual:一个免费的在线工具,用于改善 SpliceAI 剪接变异体解释。
Hum Genomics. 2023 Feb 10;17(1):7. doi: 10.1186/s40246-023-00451-1.
8
Genetic diagnosis of Duchenne and Becker muscular dystrophy through mRNA analysis: new splicing events.通过 mRNA 分析进行 Duchenne 和 Becker 肌营养不良症的基因诊断:新的剪接事件。
J Med Genet. 2023 Jun;60(6):615-619. doi: 10.1136/jmg-2022-108828. Epub 2022 Dec 19.
9
Tissue- and cell-specific whole-transcriptome meta-analysis from brain and retina reveals differential expression of dystrophin complexes and new dystrophin spliced isoforms.来自大脑和视网膜的组织及细胞特异性全转录组荟萃分析揭示了肌营养不良蛋白复合物的差异表达及新的肌营养不良蛋白剪接异构体。
Hum Mol Genet. 2023 Jan 27;32(4):659-676. doi: 10.1093/hmg/ddac236.
10
Dystrophinopathy Phenotypes and Modifying Factors in DMD Exon 45-55 Deletion.DMD 外显子 45-55 缺失的肌营养不良蛋白病表型和修饰因子。
Ann Neurol. 2022 Nov;92(5):793-806. doi: 10.1002/ana.26461. Epub 2022 Sep 7.
完美时机:活细胞中的剪接和转录速率
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Therapeutic Potential of Tricyclo-DNA antisense oligonucleotides.三环 DNA 反义寡核苷酸的治疗潜力。
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Endogenous Multiple Exon Skipping and Back-Splicing at the DMD Mutation Hotspot.DMD突变热点处的内源性多外显子跳跃和反向剪接
Int J Mol Sci. 2016 Oct 13;17(10):1722. doi: 10.3390/ijms17101722.
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Noncoding RNAs and Duchenne muscular dystrophy.非编码RNA与杜氏肌营养不良症
Epigenomics. 2016 Nov;8(11):1527-1537. doi: 10.2217/epi-2016-0088. Epub 2016 Sep 7.
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Characterization of circular RNAs in human, mouse and rat hearts.人、小鼠和大鼠心脏中环状RNA的特征分析。
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Global identification of hnRNP A1 binding sites for SSO-based splicing modulation.基于单链寡核苷酸的剪接调控中hnRNP A1结合位点的全基因组鉴定。
BMC Biol. 2016 Jul 5;14:54. doi: 10.1186/s12915-016-0279-9.
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Lessons from non-canonical splicing.非经典剪接的经验教训。
Nat Rev Genet. 2016 Jul;17(7):407-421. doi: 10.1038/nrg.2016.46. Epub 2016 May 31.
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Staurosporine allows dystrophin expression by skipping of nonsense-encoding exon.星形孢菌素通过跳跃无义编码外显子来实现抗肌萎缩蛋白的表达。
Brain Dev. 2016 Sep;38(8):738-45. doi: 10.1016/j.braindev.2016.03.003. Epub 2016 Mar 25.