Forschungszentrum Jülich (FZJ), Institute of Bio- and Geosciences (IBG-2) Plant Sciences, Wilhelm-Johnen-Straße, 52425 Jülich, Germany.
Helmholtz Zentrum München (HMGU), Plant Genome and Systems Biology (PGSB), Ingolstädter Landstraße 1, 85764, Neuherberg, Germany.
J Biotechnol. 2017 Nov 10;261:46-52. doi: 10.1016/j.jbiotec.2017.06.003. Epub 2017 Jun 9.
Recent advances in sequencing technologies have greatly accelerated the rate of plant genome and applied breeding research. Despite this advancing trend, plant genomes continue to present numerous difficulties to the standard tools and pipelines not only for genome assembly but also gene annotation and downstream analysis. Here we give a perspective on tools, resources and services necessary to assemble and analyze plant genomes and link them to plant phenotypes.
测序技术的最新进展极大地加速了植物基因组和应用育种研究的速度。尽管有这种发展趋势，但植物基因组仍然给标准工具和管道带来了许多困难，不仅在基因组组装方面，而且在基因注释和下游分析方面也是如此。在这里，我们提供了组装和分析植物基因组并将其与植物表型联系起来所需的工具、资源和服务的视角。
