Iki Taichiro, Ishikawa Masayuki, Yoshikawa Manabu
Graduate School of Frontier Biosciences, Osaka University, 1-3 Yamadaoka, Suita, Osaka, 565-0871, Japan.
Division of Plant and Microbial Sciences, Institute of Agrobiological Sciences, National Agriculture and Food Research Organization, 2-1-2 Kannondai, Tsukuba, ITsukuba, 305-8602, Ibaraki, Japan.
Methods Mol Biol. 2017;1640:39-53. doi: 10.1007/978-1-4939-7165-7_3.
Small RNA-mediated gene silencing is involved in a variety of biological processes among many eukaryotic organisms. The silencing effector, generally referred to as RNA-induced silencing complex (RISC), comprises an ARGONAUTE (AGO) protein and a small single-stranded guide RNA in its core. RISCs recognize target genes containing sequences complementary to the guide RNA and repress their expression transcriptionally or posttranscriptionally. In vitro systems that recapitulate RISC assembly are useful not only to decipher the molecular mechanisms underlying the assembly process itself but also to dissect the downstream silencing pathways mediated by RISCs. Here, we describe a method for in vitro plant RISC assembly, which relies on an extract of evacuolated protoplasts derived from Nicotiana tabacum BY-2 suspension-cultured cells. In this extract, synthetic duplexes of small RNAs are incorporated into AGO proteins that are synthesized by in vitro translation, and then duplex unwinding and selective strand elimination result in formation of mature RISCs.
小RNA介导的基因沉默参与了许多真核生物的多种生物学过程。沉默效应器通常称为RNA诱导沉默复合体(RISC),其核心由一个AGO(精氨酸)蛋白和一个小单链引导RNA组成。RISC识别含有与引导RNA互补序列的靶基因,并在转录或转录后抑制其表达。能够重现RISC组装的体外系统不仅有助于解析组装过程本身的分子机制,还能剖析由RISC介导的下游沉默途径。在此,我们描述了一种体外植物RISC组装方法,该方法依赖于从烟草BY-2悬浮培养细胞中提取的去核原生质体提取物。在这种提取物中,小RNA的合成双链体被整合到通过体外翻译合成的AGO蛋白中,然后双链解旋和选择性链消除导致成熟RISC的形成。