• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

健康科学园区的生物信息学培训需求。

Bioinformatic training needs at a health sciences campus.

作者信息

Oliver Jeffrey C

机构信息

University of Arizona Health Sciences Library, University of Arizona, Tucson, AZ, United States of America.

出版信息

PLoS One. 2017 Jun 14;12(6):e0179581. doi: 10.1371/journal.pone.0179581. eCollection 2017.

DOI:10.1371/journal.pone.0179581
PMID:28614396
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5470718/
Abstract

BACKGROUND

Health sciences research is increasingly focusing on big data applications, such as genomic technologies and precision medicine, to address key issues in human health. These approaches rely on biological data repositories and bioinformatic analyses, both of which are growing rapidly in size and scope. Libraries play a key role in supporting researchers in navigating these and other information resources.

METHODS

With the goal of supporting bioinformatics research in the health sciences, the University of Arizona Health Sciences Library established a Bioinformation program. To shape the support provided by the library, I developed and administered a needs assessment survey to the University of Arizona Health Sciences campus in Tucson, Arizona. The survey was designed to identify the training topics of interest to health sciences researchers and the preferred modes of training.

RESULTS

Survey respondents expressed an interest in a broad array of potential training topics, including "traditional" information seeking as well as interest in analytical training. Of particular interest were training in transcriptomic tools and the use of databases linking genotypes and phenotypes. Staff were most interested in bioinformatics training topics, while faculty were the least interested. Hands-on workshops were significantly preferred over any other mode of training. The University of Arizona Health Sciences Library is meeting those needs through internal programming and external partnerships.

CONCLUSION

The results of the survey demonstrate a keen interest in a variety of bioinformatic resources; the challenge to the library is how to address those training needs. The mode of support depends largely on library staff expertise in the numerous subject-specific databases and tools. Librarian-led bioinformatic training sessions provide opportunities for engagement with researchers at multiple points of the research life cycle. When training needs exceed library capacity, partnering with intramural and extramural units will be crucial in library support of health sciences bioinformatic research.

摘要

背景

健康科学研究越来越关注大数据应用,如基因组技术和精准医学,以解决人类健康的关键问题。这些方法依赖于生物数据存储库和生物信息分析,二者的规模和范围都在迅速增长。图书馆在支持研究人员使用这些及其他信息资源方面发挥着关键作用。

方法

为支持健康科学领域的生物信息学研究,亚利桑那大学健康科学图书馆设立了生物信息项目。为确定图书馆提供的支持方向,我在亚利桑那州图森市的亚利桑那大学健康科学校区开展并管理了一项需求评估调查。该调查旨在确定健康科学研究人员感兴趣的培训主题以及首选的培训方式。

结果

调查受访者对一系列潜在培训主题表现出兴趣,包括“传统”信息检索以及分析培训。特别受关注的是转录组学工具培训以及使用连接基因型和表型的数据库。工作人员对生物信息学培训主题最感兴趣,而教师兴趣最低。与其他任何培训方式相比,实践工作坊明显更受青睐。亚利桑那大学健康科学图书馆正在通过内部项目和外部合作来满足这些需求。

结论

调查结果表明对各种生物信息资源有着浓厚兴趣;图书馆面临的挑战是如何满足这些培训需求。支持方式很大程度上取决于图书馆工作人员在众多特定学科数据库和工具方面的专业知识。由图书馆员主导的生物信息学培训课程为在研究生命周期的多个阶段与研究人员互动提供了机会。当培训需求超出图书馆能力时,与校内和校外单位合作对于图书馆支持健康科学领域的生物信息学研究至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d554/5470718/ac88b04aeaeb/pone.0179581.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d554/5470718/6146af575793/pone.0179581.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d554/5470718/5da973a64277/pone.0179581.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d554/5470718/33389cb73da3/pone.0179581.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d554/5470718/ac88b04aeaeb/pone.0179581.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d554/5470718/6146af575793/pone.0179581.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d554/5470718/5da973a64277/pone.0179581.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d554/5470718/33389cb73da3/pone.0179581.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d554/5470718/ac88b04aeaeb/pone.0179581.g004.jpg

相似文献

1
Bioinformatic training needs at a health sciences campus.健康科学园区的生物信息学培训需求。
PLoS One. 2017 Jun 14;12(6):e0179581. doi: 10.1371/journal.pone.0179581. eCollection 2017.
2
Design and implementation of a library-based information service in molecular biology and genetics at the University of Pittsburgh.匹兹堡大学基于图书馆的分子生物学与遗传学信息服务的设计与实施
J Med Libr Assoc. 2006 Jul;94(3):307-13, E192.
3
Developing library bioinformatics services in context: the Purdue University Libraries bioinformationist program.在实际环境中发展图书馆生物信息学服务:普渡大学图书馆生物信息专家项目
J Med Libr Assoc. 2006 Jul;94(3):314-20, E193-7.
4
Beyond the literature: bioinformatics training for medical librarians.文献之外:医学图书馆员的生物信息学培训
Med Ref Serv Q. 2003 Spring;22(1):67-74. doi: 10.1300/J115v22n01_07.
5
The role of the academic medical center library in training public librarians.学术医学中心图书馆在公共图书馆员培训中的作用。
J Med Libr Assoc. 2003 Jul;91(3):352-60.
6
The University of Washington Health Sciences Library BioCommons: an evolving Northwest biomedical research information support infrastructure.华盛顿大学健康科学图书馆生物共享资源库:一个不断发展的西北生物医学研究信息支持基础设施。
J Med Libr Assoc. 2006 Jul;94(3):321-9.
7
Vignettes: Diverse library staff offering diverse bioinformatics services.案例:不同的图书馆工作人员提供不同的生物信息学服务。
J Med Libr Assoc. 2006 Jul;94(3):306, E188-91.
8
Expanding roles in a library-based bioinformatics service program: a case study.基于图书馆的生物信息学服务项目中不断扩展的角色:一个案例研究
J Med Libr Assoc. 2013 Oct;101(4):303-9. doi: 10.3163/1536-5050.101.4.012.
9
Health Sciences Libraries Advancing Collaborative Clinical Research Data Management in Universities.健康科学图书馆推动大学中的协作临床研究数据管理
J Escience Librariansh. 2018;7(2). doi: 10.7191/jeslib.2018.1130. Epub 2018 Jun 20.
10
Expanding Library Services and Instruction Through LibGuides.通过LibGuides扩展图书馆服务与指导
Med Ref Serv Q. 2016 Jul-Sep;35(3):342-9. doi: 10.1080/02763869.2016.1189790.

引用本文的文献

1
Survey of bioinformatics courses and concentrations in ALA-accredited master's programs.美国图书馆协会认可的硕士项目中的生物信息学课程与专业方向调查。
J Can Health Libr Assoc. 2022 Aug 4;43(2):58-67. doi: 10.29173/jchla29617. eCollection 2022 Aug.
2
Longitudinal observations of expected and actual library resource usage and barriers experienced by public health students.公共卫生专业学生对预期和实际馆藏资源使用情况及所遇障碍的纵向观察。
J Med Libr Assoc. 2020 Oct 1;108(4):618-624. doi: 10.5195/jmla.2020.691.
3
What is genomic medicine?什么是基因组医学?

本文引用的文献

1
Opinion: Big data biomedicine offers big higher education opportunities.观点:大数据生物医学提供了巨大的高等教育机遇。
Proc Natl Acad Sci U S A. 2016 Jun 7;113(23):6322-4. doi: 10.1073/pnas.1607582113.
2
Integrating translational bioinformatics into the medical curriculum.将转化生物信息学融入医学课程。
Int J Med Educ. 2014 Jul 16;5:132-4. doi: 10.5116/ijme.53ae.bc97.
3
The National Institutes of Health's Big Data to Knowledge (BD2K) initiative: capitalizing on biomedical big data.美国国立卫生研究院的“大数据到知识”(BD2K)计划:利用生物医学大数据。
J Med Libr Assoc. 2019 Jul;107(3):442-448. doi: 10.5195/jmla.2019.604. Epub 2019 Jul 1.
4
Molecular Biology Information Service: an innovative medical library-based bioinformatics support service for biomedical researchers.分子生物学信息服务:一种创新的基于医学图书馆的生物信息学支持服务,为生物医学研究人员提供服务。
Brief Bioinform. 2020 May 21;21(3):876-884. doi: 10.1093/bib/bbz035.
5
Data challenges of biomedical researchers in the age of omics.组学时代生物医学研究人员面临的数据挑战。
PeerJ. 2018 Sep 11;6:e5553. doi: 10.7717/peerj.5553. eCollection 2018.
J Am Med Inform Assoc. 2014 Nov-Dec;21(6):957-8. doi: 10.1136/amiajnl-2014-002974. Epub 2014 Jul 9.
4
Software Carpentry: lessons learned.软件木工:经验教训。
F1000Res. 2014 Feb 19;3:62. doi: 10.12688/f1000research.3-62.v2. eCollection 2014.
5
Hands-on workshops as an effective means of learning advanced technologies including genomics, proteomics and bioinformatics.动手实践工作坊是学习基因组学、蛋白质组学和生物信息学等先进技术的有效手段。
Genomics Proteomics Bioinformatics. 2013 Dec;11(6):368-77. doi: 10.1016/j.gpb.2013.10.002. Epub 2013 Dec 6.
6
Expanding roles in a library-based bioinformatics service program: a case study.基于图书馆的生物信息学服务项目中不断扩展的角色:一个案例研究
J Med Libr Assoc. 2013 Oct;101(4):303-9. doi: 10.3163/1536-5050.101.4.012.
7
Ten simple rules for developing a short bioinformatics training course.开发简短生物信息学培训课程的十条简单规则。
PLoS Comput Biol. 2011 Oct;7(10):e1002245. doi: 10.1371/journal.pcbi.1002245. Epub 2011 Oct 27.
8
Creating the future biomedical research workforce.培养未来的生物医学研究人员。
Sci Transl Med. 2011 Sep 28;3(102):102fs5. doi: 10.1126/scitranslmed.3003209.
9
Bioinformatics training: a review of challenges, actions and support requirements.生物信息学培训:挑战、行动和支持需求的回顾。
Brief Bioinform. 2010 Nov;11(6):544-51. doi: 10.1093/bib/bbq021. Epub 2010 Jun 18.
10
A quick guide for developing effective bioinformatics programming skills.培养有效生物信息学编程技能的快速指南。
PLoS Comput Biol. 2009 Dec;5(12):e1000589. doi: 10.1371/journal.pcbi.1000589. Epub 2009 Dec 24.