Department of Physics, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093, USA.
Department of Chemistry and Biochemistry, University of California, San Diego, California 92093, USA.
Phys Rev E. 2017 May;95(5-1):052408. doi: 10.1103/PhysRevE.95.052408. Epub 2017 May 17.
We compare forces resisting DNA packaging and forces driving DNA ejection in bacteriophage phi29 with theoretical predictions. Ejection of DNA from prohead-motor complexes is triggered by heating complexes after in vitro packaging and force is inferred from the suppression of ejection by applied osmotic pressure. Ejection force from 0% to 80% filling is found to be in quantitative agreement with predictions of a continuum mechanics model that assumes a repulsive DNA-DNA interaction potential based on DNA condensation studies and predicts an inverse-spool conformation. Force resisting DNA packaging from ∼80% to 100% filling inferred from optical tweezers studies is also consistent with the predictions of this model. The striking agreement with these two different measurements suggests that the overall energetics of DNA packaging is well described by the model. However, since electron microscopy studies of phi29 do not reveal a spool conformation, our findings suggest that the spool model overestimates the role of bending rigidity and underestimates the role of intrastrand repulsion. Below ∼80% filling the inferred forces resisting packaging are unexpectedly lower than the inferred ejection forces, suggesting that in this filling range the forces are less accurately determined or strongly temperature dependent.
我们将噬菌体 phi29 中阻碍 DNA 包装的力与驱动 DNA 排出的力与理论预测进行了比较。在体外包装后加热复合物会引发 DNA 从头部-马达复合物中排出,而施加的渗透压会抑制 DNA 排出,从而推断出力的大小。从 0%到 80%的填充率,我们发现排出力与基于 DNA 凝聚研究的假设 DNA-DNA 相互排斥势能的连续力学模型的预测定量一致,并预测出反向线轴构象。从光学镊子研究推断出的从 80%到 100%填充的抵抗 DNA 包装的力也与该模型的预测一致。与这两种不同测量方法的惊人一致性表明,DNA 包装的整体能量学很好地由该模型描述。然而,由于对 phi29 的电子显微镜研究并未显示出线轴构象,我们的发现表明,线轴模型高估了弯曲刚度的作用,低估了链内排斥的作用。在填充率低于 80%的情况下,抵抗包装的推断力出人意料地低于推断的排出力,这表明在该填充范围内,力的确定不太准确或强烈依赖于温度。