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Can Changes in Temperature or Ionic Conditions Modify the DNA Organization in the Full Bacteriophage Capsid?温度或离子条件的变化会改变完整噬菌体衣壳中的DNA组织吗?
J Phys Chem B. 2016 Jul 7;120(26):5975-86. doi: 10.1021/acs.jpcb.6b01783. Epub 2016 May 6.
2
Controlling the extent of viral genome release by a combination of osmotic stress and polyvalent cations.通过渗透应激和多价阳离子的组合来控制病毒基因组释放的程度。
Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Aug;92(2):022708. doi: 10.1103/PhysRevE.92.022708. Epub 2015 Aug 13.
3
Continuous allosteric regulation of a viral packaging motor by a sensor that detects the density and conformation of packaged DNA.一种传感器对病毒包装马达进行持续变构调节,该传感器可检测包装DNA的密度和构象。
Biophys J. 2015 Jan 20;108(2):315-24. doi: 10.1016/j.bpj.2014.11.3469.
4
Evidence for an electrostatic mechanism of force generation by the bacteriophage T4 DNA packaging motor.噬菌体T4 DNA包装马达产生力的静电机制的证据。
Nat Commun. 2014 Jun 17;5:4173. doi: 10.1038/ncomms5173.
5
Nonequilibrium dynamics and ultraslow relaxation of confined DNA during viral packaging.病毒包装过程中受限 DNA 的非平衡动力学和超慢弛豫。
Proc Natl Acad Sci U S A. 2014 Jun 10;111(23):8345-50. doi: 10.1073/pnas.1405109111. Epub 2014 May 27.
6
A viral packaging motor varies its DNA rotation and step size to preserve subunit coordination as the capsid fills.病毒包装马达改变其 DNA 的旋转和步长,以在衣壳填充时保持亚基协调。
Cell. 2014 Apr 24;157(3):702-713. doi: 10.1016/j.cell.2014.02.034.
7
Single-molecule studies of viral DNA packaging.病毒 DNA 包装的单分子研究。
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The DNA-packaging nanomotor of tailed bacteriophages.尾部噬菌体的 DNA 包装纳米马达。
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Salt-dependent DNA-DNA spacings in intact bacteriophage λ reflect relative importance of DNA self-repulsion and bending energies.完整噬菌体 λ 中依赖盐的 DNA-DNA 间距反映了 DNA 自我排斥和弯曲能的相对重要性。
Phys Rev Lett. 2011 Jan 14;106(2):028102. doi: 10.1103/PhysRevLett.106.028102. Epub 2011 Jan 12.
10
The Q motif of a viral packaging motor governs its force generation and communicates ATP recognition to DNA interaction.病毒包装马达的Q基序决定其力的产生,并将ATP识别与DNA相互作用联系起来。
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实验比较抵抗病毒 DNA 包装和驱动 DNA 外排的力。

Experimental comparison of forces resisting viral DNA packaging and driving DNA ejection.

机构信息

Department of Physics, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093, USA.

Department of Chemistry and Biochemistry, University of California, San Diego, California 92093, USA.

出版信息

Phys Rev E. 2017 May;95(5-1):052408. doi: 10.1103/PhysRevE.95.052408. Epub 2017 May 17.

DOI:10.1103/PhysRevE.95.052408
PMID:28618627
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5953208/
Abstract

We compare forces resisting DNA packaging and forces driving DNA ejection in bacteriophage phi29 with theoretical predictions. Ejection of DNA from prohead-motor complexes is triggered by heating complexes after in vitro packaging and force is inferred from the suppression of ejection by applied osmotic pressure. Ejection force from 0% to 80% filling is found to be in quantitative agreement with predictions of a continuum mechanics model that assumes a repulsive DNA-DNA interaction potential based on DNA condensation studies and predicts an inverse-spool conformation. Force resisting DNA packaging from ∼80% to 100% filling inferred from optical tweezers studies is also consistent with the predictions of this model. The striking agreement with these two different measurements suggests that the overall energetics of DNA packaging is well described by the model. However, since electron microscopy studies of phi29 do not reveal a spool conformation, our findings suggest that the spool model overestimates the role of bending rigidity and underestimates the role of intrastrand repulsion. Below ∼80% filling the inferred forces resisting packaging are unexpectedly lower than the inferred ejection forces, suggesting that in this filling range the forces are less accurately determined or strongly temperature dependent.

摘要

我们将噬菌体 phi29 中阻碍 DNA 包装的力与驱动 DNA 排出的力与理论预测进行了比较。在体外包装后加热复合物会引发 DNA 从头部-马达复合物中排出,而施加的渗透压会抑制 DNA 排出,从而推断出力的大小。从 0%到 80%的填充率,我们发现排出力与基于 DNA 凝聚研究的假设 DNA-DNA 相互排斥势能的连续力学模型的预测定量一致,并预测出反向线轴构象。从光学镊子研究推断出的从 80%到 100%填充的抵抗 DNA 包装的力也与该模型的预测一致。与这两种不同测量方法的惊人一致性表明,DNA 包装的整体能量学很好地由该模型描述。然而,由于对 phi29 的电子显微镜研究并未显示出线轴构象,我们的发现表明,线轴模型高估了弯曲刚度的作用,低估了链内排斥的作用。在填充率低于 80%的情况下,抵抗包装的推断力出人意料地低于推断的排出力,这表明在该填充范围内,力的确定不太准确或强烈依赖于温度。