Pascual Javier, Foesel Bärbel U, Geppert Alicia, Huber Katharina J, Overmann Jörg
Department of Microbial Ecology and Diversity Research, Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen, Braunschweig, Germany.
Technische Universität Braunschweig, Braunschweig, Germany.
Int J Syst Evol Microbiol. 2017 Jun;67(6):1727-1734. doi: 10.1099/ijsem.0.001854. Epub 2017 Jun 20.
A novel slow-growing bacterial strain designated as AW305T was isolated from an agricultural floodplain soil located in Mashare, Kavango region, Namibia. Cells stained Gram-negative, were non-motile, non-spore-forming, coccoid to rod-shaped and did not form a capsule. Colonies were yellow-pigmented, but flexirubin-type pigments were not detected. AW305T had an aerobic chemo-organoheterotrophic metabolism, using a narrow spectrum of carbon sources for growth, with preference for complex protein substrates, organic acids and amino acids. AW305T was able to grow at 15-40 °C, pH 5.3-8.3 and in the presence of up to 0.25 % (w/v) NaCl. 16S rRNA gene sequence comparison showed that AW305T belonged to the genus Flaviaesturariibacter (family Chitinophagaceae). Its closest relatives were Flaviaesturariibacter amylovorans GCR0105T (97.0 %), Flavisolibacter ginsengiterrae Gsoil 492T (93.6 %) and Flavisolibacter ginsengisoli Gsoil 643T (93.2 %). DNA-DNA hybridization experiments corroborated that AW305T represents an independent genomospecies. The genomic DNA G+C content was 57.6 mol%. Major fatty acids were iso-C15 : 1 G, iso-C15 : 0, C16 : 1ω5c, iso-C17 : 0 3-OH and summed feature 3 (C16 : 1ω7c and/or iso-C15 : 0 2-OH). The predominant respiratory quinone was MK-7, albeit minor amounts of MK-6 were also detected. The polar lipids comprised major amounts of phosphatidylethanolamine and minor amounts of two unidentified lipids, an unidentified phospholipid, an unidentified glycolipid and an unidentified aminoglycophospholipid. On the basis of the polyphasic characterization, strain AW305T represents a novel species of the genus Flaviaesturariibacter for which the name Flaviaesturariibacter luteus sp. nov. is proposed, with the type strain AW305T (=DSM 100282T=LMG 29416T).
从纳米比亚卡万戈地区马沙雷的农业洪泛区土壤中分离出一株新的生长缓慢的细菌菌株,命名为AW305T。细胞革兰氏染色阴性,无运动性,不形成芽孢,呈球状至杆状,不形成荚膜。菌落呈黄色,但未检测到flexirubin型色素。AW305T具有需氧化学有机异养代谢,利用窄谱碳源生长,偏好复杂蛋白质底物、有机酸和氨基酸。AW305T能够在15 - 40°C、pH 5.3 - 8.3以及高达0.25%(w/v)NaCl存在的条件下生长。16S rRNA基因序列比较表明,AW305T属于河口黄杆菌属(几丁质噬纤维菌科)。其最接近的亲缘种是食淀粉河口黄杆菌GCR0105T(97.0%)、人参土黄杆菌Gsoil 492T(93.6%)和人参黄杆菌Gsoil 643T(93.2%)。DNA - DNA杂交实验证实AW305T代表一个独立的基因组种。基因组DNA的G + C含量为57.6 mol%。主要脂肪酸为异C15:1 G、异C15:0、C16:1ω5c、异C17:0 3 - OH和总和特征3(C16:1ω7c和/或异C15:0 2 - OH)。主要呼吸醌为MK - 7,不过也检测到少量的MK - 6。极性脂质包括大量的磷脂酰乙醇胺和少量两种未鉴定的脂质、一种未鉴定的磷脂、一种未鉴定的糖脂和一种未鉴定的氨基糖磷脂。基于多相特征分析,菌株AW305T代表河口黄杆菌属的一个新种,为此提出名为黄色河口黄杆菌(Flaviaesturariibacter luteus sp. nov.),模式菌株为AW305T(=DSM 100282T = LMG 29416T)。