UpSetR：一个用于可视化相交集及其属性的 R 包。
UpSetR: an R package for the visualization of intersecting sets and their properties.
机构信息
Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA.
SCI Institute, School of Computing, University of Utah, Salt Lake City, UT 84112, USA.
出版信息
Bioinformatics. 2017 Sep 15;33(18):2938-2940. doi: 10.1093/bioinformatics/btx364.
MOTIVATION
Venn and Euler diagrams are a popular yet inadequate solution for quantitative visualization of set intersections. A scalable alternative to Venn and Euler diagrams for visualizing intersecting sets and their properties is needed.
RESULTS
We developed UpSetR, an open source R package that employs a scalable matrix-based visualization to show intersections of sets, their size, and other properties.
AVAILABILITY AND IMPLEMENTATION
UpSetR is available at https://github.com/hms-dbmi/UpSetR/ and released under the MIT License. A Shiny app is available at https://gehlenborglab.shinyapps.io/upsetr/ .
CONTACT
SUPPLEMENTARY INFORMATION
Supplementary data are available at Bioinformatics online.
动机
Venn 和 Euler 图是一种流行但不够完善的解决方案，用于对集合交集进行定量可视化。需要一种可扩展的替代 Venn 和 Euler 图的方法，用于可视化相交的集合及其属性。
结果
我们开发了 UpSetR，这是一个开源的 R 包，它采用基于矩阵的可扩展可视化来显示集合的交集、大小和其他属性。
可用性和实现
UpSetR 可在 https://github.com/hms-dbmi/UpSetR/ 获得，并根据麻省理工学院的许可证发布。一个 Shiny 应用程序可在 https://gehlenborglab.shinyapps.io/upsetr/ 获得。
联系方式
补充信息
补充数据可在生物信息学在线获得。
Zotero 插件