• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

X 射线晶体结构的重复转录复合物揭示了一种非典型的 RNA 延伸途径。

X-ray crystal structure of a reiterative transcription complex reveals an atypical RNA extension pathway.

机构信息

Department of Biochemistry and Molecular Biology, Center for RNA Molecular Biology, Pennsylvania State University, University Park, PA 16802;

Department of Biochemistry and Molecular Biology, Center for RNA Molecular Biology, Pennsylvania State University, University Park, PA 16802.

出版信息

Proc Natl Acad Sci U S A. 2017 Aug 1;114(31):8211-8216. doi: 10.1073/pnas.1702741114. Epub 2017 Jun 26.

DOI:10.1073/pnas.1702741114
PMID:28652344
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5547606/
Abstract

Reiterative transcription is a noncanonical form of RNA synthesis in which a nucleotide specified by a single base in the DNA template is repetitively added to the nascent transcript. Here we determined the crystal structure of an RNA polymerase, the bacterial enzyme from , engaged in reiterative transcription during transcription initiation at a promoter resembling the promoter of The structure reveals that the reiterative transcript detours from the dedicated RNA exit channel and extends toward the main channel of the enzyme, thereby allowing RNA extension without displacement of the promoter recognition σ-factor. Nascent transcripts containing reiteratively added G residues are eventually extended by nonreiterative transcription, revealing an atypical pathway for the formation of a transcription elongation complex.

摘要

重复转录是一种非典型的 RNA 合成形式,其中 DNA 模板中单个碱基指定的核苷酸被反复添加到新生的转录本中。在这里,我们确定了一种 RNA 聚合酶的晶体结构,该酶来自 ,在类似于 的启动子处进行转录起始时参与重复转录。结构显示,重复转录本绕过专用 RNA 出口通道并延伸到酶的主通道,从而允许 RNA 延伸而不置换启动子识别 σ 因子。含有重复添加的 G 残基的新生转录本最终通过非重复转录延伸,揭示了转录延伸复合物形成的一种非典型途径。

相似文献

1
X-ray crystal structure of a reiterative transcription complex reveals an atypical RNA extension pathway.X 射线晶体结构的重复转录复合物揭示了一种非典型的 RNA 延伸途径。
Proc Natl Acad Sci U S A. 2017 Aug 1;114(31):8211-8216. doi: 10.1073/pnas.1702741114. Epub 2017 Jun 26.
2
Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase.细菌 RNA 聚合酶从 pyrG 和 pyrBI 启动子进行重复转录的结构基础。
Nucleic Acids Res. 2020 Feb 28;48(4):2144-2155. doi: 10.1093/nar/gkz1221.
3
Structural basis for transcription elongation by bacterial RNA polymerase.细菌RNA聚合酶转录延伸的结构基础。
Nature. 2007 Jul 12;448(7150):157-62. doi: 10.1038/nature05932. Epub 2007 Jun 20.
4
Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 A resolution.转录起始的结构基础:分辨率为4埃的RNA聚合酶全酶
Science. 2002 May 17;296(5571):1280-4. doi: 10.1126/science.1069594.
5
A Thermus phage protein inhibits host RNA polymerase by preventing template DNA strand loading during open promoter complex formation.一种嗜热噬菌体蛋白通过阻止模板 DNA 链在开放启动子复合物形成过程中的加载来抑制宿主 RNA 聚合酶。
Nucleic Acids Res. 2018 Jan 9;46(1):431-441. doi: 10.1093/nar/gkx1162.
6
Structural basis of transcription activation.转录激活的结构基础。
Science. 2016 Jun 10;352(6291):1330-3. doi: 10.1126/science.aaf4417.
7
Attenuation control of pyrG expression in Bacillus subtilis is mediated by CTP-sensitive reiterative transcription.枯草芽孢杆菌中pyrG表达的衰减控制由CTP敏感的重复转录介导。
Proc Natl Acad Sci U S A. 2004 Jul 27;101(30):10943-8. doi: 10.1073/pnas.0403755101. Epub 2004 Jul 13.
8
Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution.分辨率为2.6埃的细菌RNA聚合酶全酶的晶体结构。
Nature. 2002 Jun 13;417(6890):712-9. doi: 10.1038/nature752. Epub 2002 May 8.
9
Regulation of gene expression by reiterative transcription.通过重复转录调控基因表达。
Curr Opin Microbiol. 2011 Apr;14(2):142-7. doi: 10.1016/j.mib.2011.01.012. Epub 2011 Feb 19.
10
Concerted Protein and Nucleic Acid Conformational Changes Observed Prior to Nucleotide Incorporation in a Bacterial RNA Polymerase: Raman Crystallographic Evidence.细菌RNA聚合酶在核苷酸掺入之前观察到的蛋白质和核酸协同构象变化:拉曼晶体学证据
Biochemistry. 2015 Sep 1;54(34):5297-305. doi: 10.1021/acs.biochem.5b00484. Epub 2015 Aug 18.

引用本文的文献

1
Structural and mechanistic basis of reiterative transcription initiation.重复转录起始的结构和机制基础。
Proc Natl Acad Sci U S A. 2022 Feb 1;119(5). doi: 10.1073/pnas.2115746119.
2
Watching the bacterial RNA polymerase transcription reaction by time-dependent soak-trigger-freeze X-ray crystallography.通过时间依赖性浸泡触发自由冻结 X 射线晶体学观察细菌 RNA 聚合酶转录反应。
Enzymes. 2021;49:305-314. doi: 10.1016/bs.enz.2021.06.009. Epub 2021 Jul 24.
3
The mechanism of the nucleo-sugar selection by multi-subunit RNA polymerases.多亚基 RNA 聚合酶对核糖类的选择机制。
Nat Commun. 2021 Feb 4;12(1):796. doi: 10.1038/s41467-021-21005-w.
4
Nucleotide Loading Modes of Human RNA Polymerase II as Deciphered by Molecular Simulations.人类 RNA 聚合酶 II 的核苷酸加载模式的分子模拟解析。
Biomolecules. 2020 Sep 7;10(9):1289. doi: 10.3390/biom10091289.
5
Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase.细菌 RNA 聚合酶从 pyrG 和 pyrBI 启动子进行重复转录的结构基础。
Nucleic Acids Res. 2020 Feb 28;48(4):2144-2155. doi: 10.1093/nar/gkz1221.
6
The Mechanisms of Substrate Selection, Catalysis, and Translocation by the Elongating RNA Polymerase.延伸 RNA 聚合酶的底物选择、催化和易位的机制。
J Mol Biol. 2019 Sep 20;431(20):3975-4006. doi: 10.1016/j.jmb.2019.05.042. Epub 2019 May 31.
7
The elemental mechanism of transcriptional pausing.转录暂停的基本机制。
Elife. 2019 Jan 8;8:e40981. doi: 10.7554/eLife.40981.
8
Mode of Action of Kanglemycin A, an Ansamycin Natural Product that Is Active against Rifampicin-Resistant Mycobacterium tuberculosis.康莱霉素 A 的作用模式,一种对耐利福平结核分枝杆菌有活性的安莎霉素天然产物。
Mol Cell. 2018 Oct 18;72(2):263-274.e5. doi: 10.1016/j.molcel.2018.08.028. Epub 2018 Sep 20.

本文引用的文献

1
Structural basis for rifamycin resistance of bacterial RNA polymerase by the three most clinically important RpoB mutations found in Mycobacterium tuberculosis.结核分枝杆菌中发现的三种临床上最重要的RpoB突变导致细菌RNA聚合酶对利福霉素耐药的结构基础。
Mol Microbiol. 2017 Mar;103(6):1034-1045. doi: 10.1111/mmi.13606. Epub 2017 Jan 10.
2
The mechanism of RNA 5′ capping with NAD+, NADH and desphospho-CoA.RNA 5′端与NAD+、NADH及去磷酸辅酶A进行加帽修饰的机制。
Nature. 2016 Jul 21;535(7612):444-7. doi: 10.1038/nature18622. Epub 2016 Jul 6.
3
The presence of an RNA:DNA hybrid that is prone to slippage promotes termination by T7 RNA polymerase.易于发生滑动的RNA:DNA杂交体的存在促进了T7 RNA聚合酶的终止作用。
J Mol Biol. 2014 Sep 9;426(18):3095-3107. doi: 10.1016/j.jmb.2014.06.012. Epub 2014 Jun 27.
4
Structural basis of transcription initiation by bacterial RNA polymerase holoenzyme.细菌RNA聚合酶全酶转录起始的结构基础
J Biol Chem. 2014 Aug 29;289(35):24549-59. doi: 10.1074/jbc.M114.584037. Epub 2014 Jun 27.
5
X-ray crystal structure of Escherichia coli RNA polymerase σ70 holoenzyme.大肠杆菌 RNA 聚合酶 σ70 全酶的 X 射线晶体结构
J Biol Chem. 2013 Mar 29;288(13):9126-34. doi: 10.1074/jbc.M112.430900. Epub 2013 Feb 6.
6
Watching the bacteriophage N4 RNA polymerase transcription by time-dependent soak-trigger-freeze X-ray crystallography.通过时间依赖浸泡触发自由冻结 X 射线晶体学观察噬菌体 N4 RNA 聚合酶转录。
J Biol Chem. 2013 Feb 1;288(5):3305-11. doi: 10.1074/jbc.M112.387712. Epub 2012 Dec 12.
7
Isolation and characterization of RNA polymerase rpoB mutations that alter transcription slippage during elongation in Escherichia coli.在大肠杆菌中分离和鉴定改变延伸过程中转录滑动的 RNA 聚合酶 rpoB 突变。
J Biol Chem. 2013 Jan 25;288(4):2700-10. doi: 10.1074/jbc.M112.429464. Epub 2012 Dec 5.
8
Structural basis of transcription initiation.转录起始的结构基础。
Science. 2012 Nov 23;338(6110):1076-80. doi: 10.1126/science.1227786. Epub 2012 Oct 18.
9
Regulation of gene expression by reiterative transcription.通过重复转录调控基因表达。
Curr Opin Microbiol. 2011 Apr;14(2):142-7. doi: 10.1016/j.mib.2011.01.012. Epub 2011 Feb 19.
10
Regulation of pyrimidine biosynthetic gene expression in bacteria: repression without repressors.细菌中嘧啶生物合成基因表达的调控:无阻遏物的阻遏作用
Microbiol Mol Biol Rev. 2008 Jun;72(2):266-300, table of contents. doi: 10.1128/MMBR.00001-08.