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从烟粉虱中提取内共生菌的方法

Methods for the Extraction of Endosymbionts from the Whitefly Bemisia tabaci.

作者信息

Zhu Dan-Tong, Wang Xin-Ru, Ban Fei-Xue, Zou Chi, Liu Shu-Sheng, Wang Xiao-Wei

机构信息

Ministry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogen and Insects, Institute of Insect Sciences, Zhejiang University.

Ministry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogen and Insects, Institute of Insect Sciences, Zhejiang University;

出版信息

J Vis Exp. 2017 Jun 19(124):55809. doi: 10.3791/55809.

DOI:10.3791/55809
PMID:28654044
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5608443/
Abstract

Bacterial symbionts form an intimate relationship with their hosts and confer advantages to the hosts in most cases. Genomic information is critical to study the functions and evolution of bacterial symbionts in their host. As most symbionts cannot be cultured in vitro, methods to isolate an adequate quantity of bacteria for genome sequencing are very important. In the whitefly Bemisia tabaci, a number of endosymbionts have been identified and are predicted to be of importance in the development and reproduction of the pests through multiple approaches. However, the mechanism underpinning the associations remains largely unknown. The obstacle partially comes from the fact that the endosymbionts in whitefly, mostly restrained in bacteriocytes, are hard to separate from the host cells. Here we report a step-by-step protocol for the identification, extraction and purification of endosymbionts from the whitefly B. tabaci mainly by dissection and filtration. Endosymbiont samples prepared by this method, although still a mixture of different endosymbiont species, are suitable for subsequent genome sequencing and analysis of the possible roles of endosymbionts in B. tabaci. This method may also be used to isolate endosymbionts from other insects.

摘要

细菌共生体与宿主形成紧密的关系,在大多数情况下会给宿主带来益处。基因组信息对于研究细菌共生体在其宿主中的功能和进化至关重要。由于大多数共生体无法在体外培养,因此分离足够数量的细菌用于基因组测序的方法非常重要。在烟粉虱中,已经鉴定出许多内共生体,并通过多种方法预测它们在害虫的发育和繁殖中具有重要作用。然而,这种关联背后的机制在很大程度上仍然未知。这一障碍部分源于这样一个事实,即烟粉虱中的内共生体大多局限于含菌细胞中,很难与宿主细胞分离。在此,我们报告了一种主要通过解剖和过滤从烟粉虱中鉴定、提取和纯化内共生体的分步方案。通过这种方法制备的内共生体样本,尽管仍然是不同内共生体物种的混合物,但适合用于后续的基因组测序以及分析内共生体在烟粉虱中的可能作用。这种方法也可用于从其他昆虫中分离内共生体。

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本文引用的文献

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Sequencing and comparison of the Rickettsia genomes from the whitefly Bemisia tabaci Middle East Asia Minor I.烟粉虱中东-小亚细亚1型中里克次氏体基因组的测序与比较
Insect Sci. 2016 Aug;23(4):531-42. doi: 10.1111/1744-7917.12367. Epub 2016 Jun 30.
2
Differential temporal changes of primary and secondary bacterial symbionts and whitefly host fitness following antibiotic treatments.抗生素处理后,初级和次级细菌共生体的不同时间变化以及粉虱宿主适应性
Sci Rep. 2015 Oct 29;5:15898. doi: 10.1038/srep15898.
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Temporal changes of symbiont density and host fitness after rifampicin treatment in a whitefly of the Bemisia tabaci species complex.在烟粉虱复合种的一种粉虱中,利福平处理后共生菌密度和宿主适合度的时间变化。
Insect Sci. 2016 Apr;23(2):200-14. doi: 10.1111/1744-7917.12276. Epub 2015 Nov 18.
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Genome expansion via lineage splitting and genome reduction in the cicada endosymbiont Hodgkinia.蝉内共生菌霍奇金氏菌通过谱系分裂实现基因组扩张及基因组缩减
Proc Natl Acad Sci U S A. 2015 Aug 18;112(33):10192-9. doi: 10.1073/pnas.1421386112. Epub 2015 May 18.
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Genome reduction and potential metabolic complementation of the dual endosymbionts in the whitefly Bemisia tabaci.烟粉虱中双内共生菌的基因组缩减及潜在代谢互补作用
BMC Genomics. 2015 Mar 21;16(1):226. doi: 10.1186/s12864-015-1379-6.
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Genomes of the rice pest brown planthopper and its endosymbionts reveal complex complementary contributions for host adaptation.水稻害虫褐飞虱及其内共生菌的基因组揭示了对宿主适应性的复杂互补贡献。
Genome Biol. 2014 Dec 3;15(12):521. doi: 10.1186/s13059-014-0521-0.
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Widespread expression of conserved small RNAs in small symbiont genomes.保守的小 RNA 在小共生体基因组中的广泛表达。
ISME J. 2014 Dec;8(12):2490-502. doi: 10.1038/ismej.2014.121. Epub 2014 Jul 11.
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