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基因型-表型图谱的结构特性。

Structural properties of genotype-phenotype maps.

作者信息

Ahnert S E

机构信息

Sainsbury Laboratory, University of Cambridge, Bateman Street, Cambridge CB2 1LR, UK

Theory of Condensed Matter Group, Cavendish Laboratory, University of Cambridge, JJ Thomson Avenue, Cambridge CB3 0HE, UK.

出版信息

J R Soc Interface. 2017 Jul;14(132). doi: 10.1098/rsif.2017.0275.

Abstract

The map between genotype and phenotype is fundamental to biology. Biological information is stored and passed on in the form of genotypes, and expressed in the form of phenotypes. A growing body of literature has examined a wide range of genotype-phenotype (GP) maps and has established a number of properties that appear to be shared by many GP maps. These properties are 'structural' in the sense that they are properties of the distribution of phenotypes across the point-mutation network of genotypes. They include: a redundancy of genotypes, meaning that many genotypes map to the same phenotypes, a highly non-uniform distribution of the number of genotypes per phenotype, a high robustness of phenotypes and the ability to reach a large number of new phenotypes within a small number of mutational steps. A further important property is that the robustness and evolvability of phenotypes are positively correlated. In this review, I give an overview of the study of GP maps with particular emphasis on these structural properties, and discuss a model that attempts to explain why these properties arise, as well as some of the fundamental ways in which the structure of GP maps can affect evolutionary outcomes.

摘要

基因型与表型之间的映射关系是生物学的基础。生物信息以基因型的形式存储和传递,并以表型的形式表达。越来越多的文献研究了广泛的基因型-表型(GP)映射关系,并确定了许多似乎为许多GP映射所共有的特性。这些特性在某种意义上是“结构性的”,因为它们是表型在基因型点突变网络上分布的特性。它们包括:基因型的冗余性,即许多基因型映射到相同的表型;每个表型的基因型数量高度不均匀分布;表型的高度稳健性以及在少数突变步骤内能够达到大量新表型的能力。另一个重要特性是表型的稳健性和可进化性呈正相关。在这篇综述中,我概述了对GP映射的研究,特别强调这些结构特性,并讨论了一个试图解释这些特性为何产生的模型,以及GP映射结构影响进化结果的一些基本方式。

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本文引用的文献

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Protein Folding: A Perspective from Theory and Experiment.蛋白质折叠:理论与实验视角
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Latent phenotypes pervade gene regulatory circuits.潜在表型遍及基因调控回路。
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