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让时钟滴答作响:植物生物钟的转录图谱。

Making the clock tick: the transcriptional landscape of the plant circadian clock.

作者信息

Ronald James, Davis Seth J

机构信息

Department of Biology, University of York, York, YO10 5DD, UK.

出版信息

F1000Res. 2017 Jun 21;6:951. doi: 10.12688/f1000research.11319.1. eCollection 2017.

DOI:10.12688/f1000research.11319.1
PMID:28690840
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5482331/
Abstract

Circadian clocks are molecular timekeepers that synchronise internal physiological processes with the external environment by integrating light and temperature stimuli. As in other eukaryotic organisms, circadian rhythms in plants are largely generated by an array of nuclear transcriptional regulators and associated co-regulators that are arranged into a series of interconnected molecular loops. These transcriptional regulators recruit chromatin-modifying enzymes that adjust the structure of the nucleosome to promote or inhibit DNA accessibility and thus guide transcription rates. In this review, we discuss the recent advances made in understanding the architecture of the oscillator and the chromatin dynamics that regulate the generation of rhythmic patterns of gene expression within the circadian clock.

摘要

生物钟是分子计时器,通过整合光和温度刺激,使内部生理过程与外部环境同步。与其他真核生物一样,植物中的昼夜节律很大程度上是由一系列核转录调节因子和相关的共调节因子产生的,这些因子排列成一系列相互连接的分子环。这些转录调节因子招募染色质修饰酶,这些酶会调整核小体的结构,以促进或抑制DNA的可及性,从而指导转录速率。在这篇综述中,我们讨论了在理解生物钟振荡器的结构以及调节生物钟内基因表达节律模式产生的染色质动力学方面取得的最新进展。

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本文引用的文献

1
Molecular mechanisms at the core of the plant circadian oscillator.植物昼夜节律振荡器核心的分子机制。
Nat Struct Mol Biol. 2016 Dec;23(12):1061-1069. doi: 10.1038/nsmb.3327. Epub 2016 Dec 6.
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LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.LWD-TCP 复合物在拟南芥中激活早晨基因 CCA1。
Nat Commun. 2016 Oct 13;7:13181. doi: 10.1038/ncomms13181.
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Diurnal changes in the histone H3 signature H3K9ac|H3K27ac|H3S28p are associated with diurnal gene expression in Arabidopsis.组蛋白H3标记H3K9ac|H3K27ac|H3S28p的昼夜变化与拟南芥中的昼夜基因表达相关。
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Histone variants in plant transcriptional regulation.植物转录调控中的组蛋白变体。
Biochim Biophys Acta Gene Regul Mech. 2017 Jan;1860(1):123-130. doi: 10.1016/j.bbagrm.2016.07.002. Epub 2016 Jul 10.
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Molecular convergence of clock and photosensory pathways through PIF3-TOC1 interaction and co-occupancy of target promoters.通过PIF3-TOC1相互作用以及靶启动子的共同占据实现生物钟与光感通路的分子趋同。
Proc Natl Acad Sci U S A. 2016 Apr 26;113(17):4870-5. doi: 10.1073/pnas.1603745113. Epub 2016 Apr 11.
6
Revised Morning Loops of the Arabidopsis Circadian Clock Based on Analyses of Direct Regulatory Interactions.基于直接调控相互作用分析的拟南芥生物钟的修正晨环
PLoS One. 2015 Dec 1;10(12):e0143943. doi: 10.1371/journal.pone.0143943. eCollection 2015.
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Identification of Evening Complex Associated Proteins in Arabidopsis by Affinity Purification and Mass Spectrometry.通过亲和纯化和质谱法鉴定拟南芥中的夜间复合体相关蛋白
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Integrating circadian dynamics with physiological processes in plants.将生物钟动态与植物生理过程相结合。
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Genome-wide identification of CCA1 targets uncovers an expanded clock network in Arabidopsis.全基因组范围内对CCA1靶标的鉴定揭示了拟南芥中扩展的生物钟网络。
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