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Genome-wide Mapping of the Nucleosome Landscape by Micrococcal Nuclease and Chemical Mapping.
Trends Genet. 2017 Aug;33(8):495-507. doi: 10.1016/j.tig.2017.05.007. Epub 2017 Jul 7.
2
Characterization of the Nucleosome Landscape by Micrococcal Nuclease-Sequencing (MNase-seq).
Methods Mol Biol. 2018;1689:83-101. doi: 10.1007/978-1-4939-7380-4_8.
4
Profiling Nucleosome Occupancy by MNase-seq: Experimental Protocol and Computational Analysis.
Methods Mol Biol. 2018;1675:167-181. doi: 10.1007/978-1-4939-7318-7_11.
6
Application of MNase-Seq in the Global Mapping of Nucleosome Positioning in Plants.
Methods Mol Biol. 2018;1830:353-366. doi: 10.1007/978-1-4939-8657-6_21.
7
Genome-wide mapping of nucleosome positions in yeast using high-resolution MNase ChIP-Seq.
Methods Enzymol. 2012;513:233-50. doi: 10.1016/B978-0-12-391938-0.00010-0.
8
Genome-wide chromatin mapping with size resolution reveals a dynamic sub-nucleosomal landscape in Arabidopsis.
PLoS Genet. 2017 Sep 13;13(9):e1006988. doi: 10.1371/journal.pgen.1006988. eCollection 2017 Sep.
9
Analysis of chromatin organization by deep sequencing technologies.
Methods Mol Biol. 2013;983:173-83. doi: 10.1007/978-1-62703-302-2_9.
10
High-Resolution ChIP-MNase Mapping of Nucleosome Positions at Selected Genomic Loci and Alleles.
Methods Mol Biol. 2021;2351:123-145. doi: 10.1007/978-1-0716-1597-3_7.

引用本文的文献

1
Perspective on recent developments and challenges in regulatory and systems genomics.
Bioinform Adv. 2025 May 9;5(1):vbaf106. doi: 10.1093/bioadv/vbaf106. eCollection 2025.
2
Genome-Wide Nucleosome Mapping by H3Q85C-Directed Chemical Cleavage in Saccharomyces cerevisiae.
Methods Mol Biol. 2025;2919:155-177. doi: 10.1007/978-1-0716-4486-7_9.
3
Dinochromosome Heterotermini with Telosomal Anchorages.
Int J Mol Sci. 2024 Oct 21;25(20):11312. doi: 10.3390/ijms252011312.
5
The GATAD2B-NuRD complex drives DNA:RNA hybrid-dependent chromatin boundary formation upon DNA damage.
EMBO J. 2024 Jun;43(12):2453-2485. doi: 10.1038/s44318-024-00111-7. Epub 2024 May 8.
6
Mapping Nucleosome Location Using FS-Seq.
Methods Mol Biol. 2023;2611:21-38. doi: 10.1007/978-1-0716-2899-7_2.
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Chromosome conformation capture approaches to investigate 3D genome architecture in Ankylosing Spondylitis.
Front Genet. 2023 Jan 25;14:1129207. doi: 10.3389/fgene.2023.1129207. eCollection 2023.
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Establishment and Maintenance of Open Ribosomal RNA Gene Chromatin States in Eukaryotes.
Methods Mol Biol. 2022;2533:25-38. doi: 10.1007/978-1-0716-2501-9_2.
10
On the role of transcription in positioning nucleosomes.
PLoS Comput Biol. 2021 Jan 8;17(1):e1008556. doi: 10.1371/journal.pcbi.1008556. eCollection 2021 Jan.

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2
MNase-Sensitive Complexes in Yeast: Nucleosomes and Non-histone Barriers.
Mol Cell. 2017 Feb 2;65(3):565-577.e3. doi: 10.1016/j.molcel.2016.12.009.
3
Variable chromatin structure revealed by in situ spatially correlated DNA cleavage mapping.
Nature. 2017 Jan 12;541(7636):237-241. doi: 10.1038/nature20781. Epub 2016 Dec 26.
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Insights into Nucleosome Organization in Mouse Embryonic Stem Cells through Chemical Mapping.
Cell. 2016 Dec 1;167(6):1555-1570.e15. doi: 10.1016/j.cell.2016.10.049. Epub 2016 Nov 23.
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Cell fate control by pioneer transcription factors.
Development. 2016 Jun 1;143(11):1833-7. doi: 10.1242/dev.133900.
9
Categorical spectral analysis of periodicity in nucleosomal DNA.
Nucleic Acids Res. 2016 Mar 18;44(5):2047-57. doi: 10.1093/nar/gkw101. Epub 2016 Feb 17.
10
Nucleosome Stability Distinguishes Two Different Promoter Types at All Protein-Coding Genes in Yeast.
Mol Cell. 2015 Nov 5;60(3):422-34. doi: 10.1016/j.molcel.2015.10.002.

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