Composite membranes were successfully prepared using a phase-inversion method. The X-ray powder diffraction (XRD) and energy dispersive X-ray (EDX) profiles has confirmed formation of 4.8 wt % Ag/poly(vinylidene fluoride-co-hexafluoropropene) (PVDF-HFP), 3 wt % Ag-MWCNTs/PVDF-HFP (EDX surface composition of Ag nanoparticles) and 1.5 wt % MWCNTs/PVDF-HFP composite membranes. The MWCNTs crystallites are mainly encapsulated by a layer of PVDF-HFP, as evidenced by disappearance of graphitic peak. The scanning electron microscopy (SEM) images have depicted the formation of microporous structure, with few MWCNTs on the surface and strongly interacting with PVDF-HFP as demonstrated by thermogravimetric analysis (TGA), XRD and Fourier transform infrared (FTIR) data. The data indicated an increase in porosity, swellability and water content of the PVDF-HFP membrane with the addition of MWCNTs and/or Ag nanoparticles, showing an improved hydrophilicity. The 1.5 wt % MWCNTs/PVDF-HFP composite membrane showed good desalination and fouling resistance rates, which correlates with a low water contact angle. The combined effects of Ag nanoparticles and MWCNTs do not promote fouling resistance of PVDF-HFP membranes, as shown during NaCl microfiltration (this is linked with high water contact angle as compared to that of MWCNTs/PVDF-HFP composite). Both 1.5 wt % MWCNTs/PVDF-HFP and 3 wt % Ag-MWCNTs/PVDF-HFP composite membranes prevented the bacteria passing through the membrane (100% bacterial load reduction). The surface of 3 wt % Ag-MWCNTs/PVDF-HFP showed good bactericidal and non-leaching properties of the dopant materials (MWCNTs and Ag), as evidenced by bacterial growth on the edges of the membranes.