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不依赖结构的核苷酸序列分析

Structure-independent nucleotide sequence analysis.

作者信息

Mills D R, Kramer F R

出版信息

Proc Natl Acad Sci U S A. 1979 May;76(5):2232-5. doi: 10.1073/pnas.76.5.2232.

DOI:10.1073/pnas.76.5.2232
PMID:287063
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC383572/
Abstract

Substitution of inosine for granosine in the nucleic acid fragments synthesized for the sequencing of RNA effectively prevents the formation of secondary structures during electrophoretic analysis. Consequently, the mobility of each fragment in the sequencing gel is a strict function of its molecular weight. Inosine substitution should markedly improve the resolution that can be obtained in the sequencing of DNA as well as RNA.

摘要

在为RNA测序合成的核酸片段中,用肌苷替代鸟苷可有效防止电泳分析过程中二级结构的形成。因此,每个片段在测序凝胶中的迁移率严格取决于其分子量。肌苷替代应能显著提高DNA和RNA测序的分辨率。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/25d7/383572/69170b8f979b/pnas00005-0152-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/25d7/383572/754ed1b409e9/pnas00005-0151-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/25d7/383572/69170b8f979b/pnas00005-0152-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/25d7/383572/754ed1b409e9/pnas00005-0151-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/25d7/383572/69170b8f979b/pnas00005-0152-a.jpg

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本文引用的文献

1
ENZYMATIC SYNTHESIS OF DEOXYRIBONUCLEIC ACID. III. THE INCORPORATION OF PYRIMIDINE AND PURINE ANALOGUES INTO DEOXYRIBONUCLEIC ACID.脱氧核糖核酸的酶促合成。III. 嘧啶和嘌呤类似物掺入脱氧核糖核酸的研究
Proc Natl Acad Sci U S A. 1958 Jul 15;44(7):633-40. doi: 10.1073/pnas.44.7.633.
2
CONVERSION OF MONO- AND OLIGODEOXYRIBONUCLEOTIDES TO 5-TRIPHOSPHATES.单脱氧核糖核苷酸和寡脱氧核糖核苷酸向5-三磷酸酯的转化。
J Am Chem Soc. 1965 Apr 20;87:1785-8. doi: 10.1021/ja01086a031.
3
HELIX--RANDOM COIL TRANSITIONS IN DNA HOMOPOLYMER PAIRS.DNA同聚物对中的螺旋-无规卷曲转变
一种实用的 T 细胞受体克隆和表达方法。
PLoS One. 2011;6(11):e27930. doi: 10.1371/journal.pone.0027930. Epub 2011 Nov 21.
4
Understanding the errors of SHAPE-directed RNA structure modeling.理解 SHAPE 指导的 RNA 结构建模中的错误。
Biochemistry. 2011 Sep 20;50(37):8049-56. doi: 10.1021/bi200524n. Epub 2011 Aug 25.
5
A mutate-and-map strategy accurately infers the base pairs of a 35-nucleotide model RNA.一种突变映射策略能准确推断出 35 个核苷酸模型 RNA 的碱基对。
RNA. 2011 Mar;17(3):522-34. doi: 10.1261/rna.2516311. Epub 2011 Jan 14.
6
Identification of two forms of Q{beta} replicase with different thermal stabilities but identical RNA replication activity.鉴定具有不同热稳定性但具有相同 RNA 复制活性的两种 Qβ 复制酶形式。
J Biol Chem. 2010 Nov 26;285(48):37210-7. doi: 10.1074/jbc.M110.117846. Epub 2010 Sep 21.
7
Properties of pseudo-complementary DNA substituted with weakly pairing analogs of guanine or cytosine.用鸟嘌呤或胞嘧啶的弱配对类似物取代的假互补DNA的性质。
Nucleic Acids Res. 2008 Dec;36(22):6999-7008. doi: 10.1093/nar/gkn797. Epub 2008 Nov 5.
8
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EMBO J. 1985 Jul;4(7):1667-72. doi: 10.1002/j.1460-2075.1985.tb03835.x.
9
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EMBO J. 1986 Jun;5(6):1149-58. doi: 10.1002/j.1460-2075.1986.tb04340.x.
10
An endochitinase gene expressed at high levels in the stylar transmitting tissue of tomatoes.一个在内生番茄花柱传递组织中高水平表达的内切几丁质酶基因。
Plant Mol Biol. 1996 Mar;30(5):899-911. doi: 10.1007/BF00020802.
J Mol Biol. 1964 Apr;8:452-69. doi: 10.1016/s0022-2836(64)80003-6.
4
The role of deoxyribonucleic acid in ribonucleic acid synthesis. IV. The incorporation of pyrimidine and purine analogues into ribonucleic acid.脱氧核糖核酸在核糖核酸合成中的作用。IV. 嘧啶和嘌呤类似物掺入核糖核酸的过程。
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5
Tautomeric forms in a polynucleotide helix and their bearing on the structure of DNA.多核苷酸螺旋中的互变异构形式及其与DNA结构的关系。
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6
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J Mol Biol. 1965 Nov;14(1):214-20. doi: 10.1016/s0022-2836(65)80241-8.
8
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Fed Proc. 1965 Nov-Dec;24(6):1446-57.
9
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Nature. 1969 Dec 13;224(5224):1083-6. doi: 10.1038/2241083a0.
10
A two-dimensional fractionation procedure for radioactive nucleotides.一种用于放射性核苷酸的二维分级分离程序。
J Mol Biol. 1965 Sep;13(2):373-98. doi: 10.1016/s0022-2836(65)80104-8.