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在隔室内聚合物无模板延伸模型中对基序的益生元选择。

Prebiotic selection for motifs in a model of template-free elongation of polymers within compartments.

作者信息

Kinsler Grant, Sinai Sam, Lee Nicholas Keone, Nowak Martin A

机构信息

Dept. Applied Mathematics, School of Engineering and Applied Sciences, Harvard University, Cambridge, MA, United States of America.

Dept. Biology, Stanford University, Stanford, CA, United States of America.

出版信息

PLoS One. 2017 Jul 19;12(7):e0180208. doi: 10.1371/journal.pone.0180208. eCollection 2017.

Abstract

The transition from prelife where self-replication does not occur, to life which exhibits self-replication and evolution, has been a subject of interest for many decades. Membranes, forming compartments, seem to be a critical component of this transition as they provide several concurrent benefits. They maintain localized interactions, generate electro-chemical gradients, and help in selecting cooperative functions as they arise. These functions pave the way for the emergence and maintenance of simple metabolic cycles and polymers. In the context of origin of life, evolution of information-carrying molecules and RNA based enzymes within compartments has been subject to intensive theoretical and experimental research. Hence, many experimental efforts aim to produce compartments that contain elongating polynucleotides (also referred to as protocells), which store information and perform catalysis. Despite impressive experimental progress, we are still relatively ignorant about the dynamics by which elongating polynucleotides can produce more sophisticated behaviors. Here we perform computer simulations to couple information production through template-free elongation of polymers with dividing compartments. We find that polymers with a simple ability-biasing the concentration of monomers within their own compartment-can acquire a selective advantage in prelife. We further investigate whether such a mechanism allows for cooperative dynamics to dominate over purely competitive ones. We show that under this system of biased monomer addition, even without template-directed self-replication, genetic motifs can emerge, compete, cooperate, and ultimately survive within the population.

摘要

从不存在自我复制的前生命状态到展现出自我复制和进化的生命状态的转变,几十年来一直是人们感兴趣的课题。形成区室的膜似乎是这一转变的关键组成部分,因为它们提供了多种协同的益处。它们维持局部相互作用,产生电化学梯度,并在合作功能出现时帮助进行选择。这些功能为简单代谢循环和聚合物的出现与维持铺平了道路。在生命起源的背景下,区室内携带信息的分子和基于RNA的酶的进化一直是深入的理论和实验研究的主题。因此,许多实验致力于制造包含正在延长的多核苷酸(也称为原始细胞)的区室,这些多核苷酸存储信息并进行催化。尽管取得了令人瞩目的实验进展,但我们对延长的多核苷酸能够产生更复杂行为的动力学仍然知之甚少。在这里,我们进行计算机模拟,将通过聚合物的无模板延长产生信息与区室分裂相结合。我们发现,具有一种简单能力——使自身区室内单体浓度产生偏差——的聚合物在前生命状态中能够获得选择性优势。我们进一步研究这种机制是否能使合作动力学比纯粹的竞争动力学占主导地位。我们表明,在这种偏向单体添加的系统中,即使没有模板导向的自我复制,遗传基序也能出现、竞争、合作,并最终在群体中存活下来。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/73aa/5516967/3fdf01e822a1/pone.0180208.g001.jpg

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