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盐单胞菌属新种,分离自深海沉积物。

Salinicola peritrichatus sp. nov., isolated from deep-sea sediment.

机构信息

State Key Laboratory of Satellite Ocean Environment Dynamics, Second Institute of Oceanography, State Oceanic Administration, Hangzhou 310012, People's Republic of China.

出版信息

Antonie Van Leeuwenhoek. 2013 Jul;104(1):55-62. doi: 10.1007/s10482-013-9925-1. Epub 2013 Apr 23.

Abstract

A Gram stain-negative, aerobic and rod-shaped bacterium, strain DY22(T), was isolated from a deep-sea sediment collected from the east Pacific Ocean. The isolate was found to grow in the presence of 0-20.0 % (w/v) NaCl and at pH 4.5-8.5; optimum growth was observed with 0.5-2.0 % (w/v) NaCl and at pH 5.0-7.0. Chemotaxonomic analysis showed the presence of ubiquinone-9 as predominant respiratory quinone and C16:0, C19:0 ω8c cyclo and C12:0 3-OH as major cellular fatty acids. The genomic DNA G+C content was determined to be 59.6 mol%. Comparative 16S rRNA gene sequence analysis revealed that the novel isolate belongs to the genus Salinicola. Strain DY22(T) exhibited the closest phylogenetic affinity to the type strain of Salinicola salarius with 97.2 % sequence similarity and less than 97 % sequence similarity with respect to other Salinicola species with validly published names. The DNA-DNA reassociation values between strain DY22(T) and S. salarius DSM 18044(T) was 52 ± 4 %. On the basis of phenotypic, chemotaxonomic and genotypic data, strain DY22(T) represents a novel species of the genus Salinicola, for which the name Salinicola peritrichatus sp. nov. (type strain DY22(T) = CGMCC 1.12381(T) = JCM 18795(T)) is proposed.

摘要

一株革兰氏阴性、需氧、杆状的细菌,DY22(T) 菌株,从东太平洋深海沉积物中分离得到。该分离株被发现能够在 0-20.0%(w/v)NaCl 和 pH4.5-8.5 的条件下生长;最佳生长条件为 0.5-2.0%(w/v)NaCl 和 pH5.0-7.0。化学分类分析表明,主要的呼吸醌是泛醌-9,主要的细胞脂肪酸是 C16:0、C19:0 ω8c 环和 C12:0 3-OH。基因组 DNA G+C 含量为 59.6mol%。比较 16S rRNA 基因序列分析表明,该新分离株属于盐单胞菌属。DY22(T) 菌株与盐单胞菌属的模式种盐单胞菌 S. salarius DSM 18044(T) 具有最密切的系统发育亲缘关系,与其他具有有效发表名称的盐单胞菌属种的序列相似度为 97.2%,而小于 97%。DY22(T) 菌株与 S. salarius DSM 18044(T) 之间的 DNA-DNA 同源性为 52±4%。基于表型、化学分类和基因型数据,DY22(T) 菌株代表了盐单胞菌属的一个新种,命名为 peritrichatus 盐单胞菌 sp. nov.(模式菌株 DY22(T)=CGMCC 1.12381(T)=JCM 18795(T))。

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