Deshpande Aditi R, Pochapsky Thomas C, Ringe Dagmar
Departments of Biochemistry and ‡Chemistry and §the Rosenstiel Institute for Basic Biomedical Research, Brandeis University , Waltham, Massachusetts 02454, United States.
Chem Rev. 2017 Aug 9;117(15):10474-10501. doi: 10.1021/acs.chemrev.7b00117. Epub 2017 Jul 21.
Acireductone dioxygenase (ARD) from the methionine salvage pathway (MSP) is a unique enzyme that exhibits dual chemistry determined solely by the identity of the divalent transition-metal ion (Fe or Ni) in the active site. The Fe-containing isozyme catalyzes the on-pathway reaction using substrates 1,2-dihydroxy-3-keto-5-methylthiopent-1-ene (acireductone) and dioxygen to generate formate and the ketoacid precursor of methionine, 2-keto-4-methylthiobutyrate, whereas the Ni-containing isozyme catalyzes an off-pathway shunt with the same substrates, generating methylthiopropionate, carbon monoxide, and formate. The dual chemistry of ARD was originally discovered in the bacterium Klebsiella oxytoca, but it has recently been shown that mammalian ARD enzymes (mouse and human) are also capable of catalyzing metal-dependent dual chemistry in vitro. This is particularly interesting, since carbon monoxide, one of the products of off-pathway reaction, has been identified as an antiapoptotic molecule in mammals. In addition, several biochemical and genetic studies have indicated an inhibitory role of human ARD in cancer. This comprehensive review describes the biochemical and structural characterization of the ARD family, the proposed experimental and theoretical approaches to establishing mechanisms for the dual chemistry, insights into the mechanism based on comparison with structurally and functionally similar enzymes, and the applications of this research to the field of artificial metalloenzymes and synthetic biology.
来自甲硫氨酸补救途径(MSP)的乙醛酸还原酶(ARD)是一种独特的酶,其展现出的双重化学性质仅由活性位点中二价过渡金属离子(铁或镍)的种类决定。含铁同工酶利用底物1,2 - 二羟基 - 3 - 酮 - 5 - 甲基硫代戊 - 1 - 烯(乙醛酸)和双氧催化途径上的反应,生成甲酸和甲硫氨酸的酮酸前体2 - 酮 - 4 - 甲基硫代丁酸,而含镍同工酶则利用相同底物催化一条旁路分流反应,生成甲基硫丙酸、一氧化碳和甲酸。ARD的双重化学性质最初是在产酸克雷伯菌中发现的,但最近研究表明,哺乳动物的ARD酶(小鼠和人类)在体外也能够催化依赖金属的双重化学性质。这一点尤其有趣,因为旁路反应的产物之一一氧化碳已被确定为哺乳动物中的一种抗凋亡分子。此外,多项生化和遗传学研究表明人类ARD在癌症中具有抑制作用。这篇综述全面描述了ARD家族的生化和结构特征、用于建立双重化学性质机制的实验和理论方法、通过与结构和功能相似的酶进行比较而获得的对该机制的见解,以及这项研究在人工金属酶和合成生物学领域的应用。