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用于有机分子势垒高度和反应能量学的基准密度泛函紧束缚模型

Benchmarking density functional tight binding models for barrier heights and reaction energetics of organic molecules.

作者信息

Gruden Maja, Andjeklović Ljubica, Jissy Akkarapattiakal Kuriappan, Stepanović Stepan, Zlatar Matija, Cui Qiang, Elstner Marcus

机构信息

Center for Computational Chemistry and Bioinformatics, Faculty of Chemistry, University of Belgrade, Studentski Trg 12-16, Belgrade, 11001, Serbia.

Department of Chemistry, IChTM, University of Belgrade, Studentski Trg 12-16, 11001, Belgrade, Serbia.

出版信息

J Comput Chem. 2017 Sep 30;38(25):2171-2185. doi: 10.1002/jcc.24866. Epub 2017 Jul 24.

DOI:10.1002/jcc.24866
PMID:28736893
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5554453/
Abstract

Density Functional Tight Binding (DFTB) models are two to three orders of magnitude faster than ab initio and Density Functional Theory (DFT) methods and therefore are particularly attractive in applications to large molecules and condensed phase systems. To establish the applicability of DFTB models to general chemical reactions, we conduct benchmark calculations for barrier heights and reaction energetics of organic molecules using existing databases and several new ones compiled in this study. Structures for the transition states and stable species have been fully optimized at the DFTB level, making it possible to characterize the reliability of DFTB models in a more thorough fashion compared to conducting single point energy calculations as done in previous benchmark studies. The encouraging results for the diverse sets of reactions studied here suggest that DFTB models, especially the most recent third-order version (DFTB3/3OB augmented with dispersion correction), in most cases provide satisfactory description of organic chemical reactions with accuracy almost comparable to popular DFT methods with large basis sets, although larger errors are also seen for certain cases. Therefore, DFTB models can be effective for mechanistic analysis (e.g., transition state search) of large (bio)molecules, especially when coupled with single point energy calculations at higher levels of theory. © 2017 Wiley Periodicals, Inc.

摘要

密度泛函紧束缚(DFTB)模型的计算速度比从头算和密度泛函理论(DFT)方法快两到三个数量级,因此在应用于大分子和凝聚相体系时特别具有吸引力。为了确定DFTB模型对一般化学反应的适用性,我们利用现有数据库以及本研究中汇编的几个新数据库,对有机分子的势垒高度和反应能量进行了基准计算。过渡态和稳定物种的结构已在DFTB水平上进行了完全优化,与以往基准研究中进行的单点能量计算相比,这使得能够更全面地描述DFTB模型的可靠性。本文研究的各种反应的令人鼓舞的结果表明,DFTB模型,尤其是最新版本(添加了色散校正的DFTB3/3OB),在大多数情况下能够对有机化学反应提供令人满意的描述,其准确性几乎与使用大基组的流行DFT方法相当,尽管在某些情况下也会出现较大误差。因此,DFTB模型对于大(生物)分子的机理分析(如过渡态搜索)可能是有效的,特别是当与更高理论水平的单点能量计算相结合时。© 2017威利期刊公司

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