Suppr超能文献

用于化学和生化应用中非共价相互作用的半经验量子力学方法

Semiempirical Quantum Mechanical Methods for Noncovalent Interactions for Chemical and Biochemical Applications.

作者信息

Christensen Anders S, Kubař Tomáš, Cui Qiang, Elstner Marcus

机构信息

Department of Chemistry and Theoretical Chemistry Institute, University of Wisconsin-Madison , 1101 University Avenue, Madison, Wisconsin 53706, United States.

出版信息

Chem Rev. 2016 May 11;116(9):5301-37. doi: 10.1021/acs.chemrev.5b00584. Epub 2016 Apr 13.

Abstract

Semiempirical (SE) methods can be derived from either Hartree-Fock or density functional theory by applying systematic approximations, leading to efficient computational schemes that are several orders of magnitude faster than ab initio calculations. Such numerical efficiency, in combination with modern computational facilities and linear scaling algorithms, allows application of SE methods to very large molecular systems with extensive conformational sampling. To reliably model the structure, dynamics, and reactivity of biological and other soft matter systems, however, good accuracy for the description of noncovalent interactions is required. In this review, we analyze popular SE approaches in terms of their ability to model noncovalent interactions, especially in the context of describing biomolecules, water solution, and organic materials. We discuss the most significant errors and proposed correction schemes, and we review their performance using standard test sets of molecular systems for quantum chemical methods and several recent applications. The general goal is to highlight both the value and limitations of SE methods and stimulate further developments that allow them to effectively complement ab initio methods in the analysis of complex molecular systems.

摘要

半经验(SE)方法可以通过应用系统近似从哈特里-福克(Hartree-Fock)理论或密度泛函理论推导而来,从而产生比从头计算快几个数量级的高效计算方案。这种数值效率,结合现代计算设备和线性缩放算法,使得SE方法能够应用于具有广泛构象采样的非常大的分子系统。然而,为了可靠地模拟生物和其他软物质系统的结构、动力学和反应性,需要在描述非共价相互作用方面具有良好的准确性。在这篇综述中,我们根据流行的SE方法对非共价相互作用进行建模的能力进行分析,特别是在描述生物分子、水溶液和有机材料的背景下。我们讨论了最显著的误差和提出的校正方案,并使用量子化学方法的分子系统标准测试集和几个近期应用来回顾它们的性能。总体目标是突出SE方法的价值和局限性,并刺激进一步的发展,使它们能够在复杂分子系统的分析中有效地补充从头计算方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9355/4867870/22ee3dfa37b3/cr-2015-005844_0006.jpg

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验