人乳头瘤病毒20型（HPV-20/Lancaster/2015株）基因组序列
Genome Sequence of Human Papillomavirus Type 20, Strain HPV-20/Lancaster/2015.
作者信息
Atkinson Kate V, Bishop Lisa A, Rhodes Glenn, Salez Nicolas, McEwan Neil R, Hegarty Matthew J, Robey Julie, Harding Nicola, Wetherell Simon, Lauder Robert M, Pickup Roger W, Wilkinson Mark, Gatherer Derek
机构信息
Division of Biomedical & Life Sciences, Faculty of Health & Medicine, Lancaster University, Lancaster, United Kingdom.
Royal Lancaster Infirmary, Lancaster, United Kingdom.
出版信息
Genome Announc. 2017 Aug 3;5(31):e00712-17. doi: 10.1128/genomeA.00712-17.
Abstract
The genome sequence of human papillomavirus type 20 (HPV-20; family , genus , species , type 20) was assembled by deep sequencing from nasopharyngeal swabs. The assembled genome is 0.37% divergent over its full length from the single complete genome of HPV-20 in GenBank (U31778). We named the strain HPV-20/Lancaster/2015.
摘要
通过对鼻咽拭子进行深度测序，组装出了20型人乳头瘤病毒（HPV - 20；科 ，属 ，种 ，20型）的基因组序列。与GenBank中HPV - 20的单个完整基因组（U31778）相比，组装出的基因组全长有0.37%的差异。我们将该毒株命名为HPV - 20/兰开斯特/2015。
相似文献
1
Genome Sequence of Human Papillomavirus Type 20, Strain HPV-20/Lancaster/2015.人乳头瘤病毒20型（HPV-20/Lancaster/2015株）基因组序列
Genome Announc. 2017 Aug 3;5(31):e00712-17. doi: 10.1128/genomeA.00712-17.
2
Genome Sequence of Human Papillomavirus 23 Strain HPV-23/Lancaster/2015.人乳头瘤病毒23型HPV-23/Lancaster/2015株的基因组序列
Genome Announc. 2017 May 18;5(20):e00257-17. doi: 10.1128/genomeA.00257-17.
3
Genome Sequence of Human Rhinovirus A22, Strain Lancaster/2015.人鼻病毒A22型兰开斯特/2015株的基因组序列
Genome Announc. 2017 Mar 23;5(12):e01713-16. doi: 10.1128/genomeA.01713-16.
4
Identification of a novel human papillomavirus by metagenomic analysis of vaginal swab samples from pregnant women.通过对孕妇阴道拭子样本进行宏基因组分析鉴定一种新型人乳头瘤病毒。
Virol J. 2016 Jul 4;13:122. doi: 10.1186/s12985-016-0583-6.
5
[Sequence analysis of the late region of human papillomavirus type 6 genome].
Zhongguo Yi Xue Ke Xue Yuan Xue Bao. 2001 Dec;23(6):568-72.
6
The nasal mucosa contains a large spectrum of human papillomavirus types from the Betapapillomavirus and Gammapapillomavirus genera.鼻腔黏膜含有大量的人乳头瘤病毒类型，包括β乳头瘤病毒属和γ乳头瘤病毒属。
J Infect Dis. 2013 Oct 15;208(8):1335-41. doi: 10.1093/infdis/jit326. Epub 2013 Jul 21.
7
Complete genome sequence of a novel human papillomavirus identified by metagenomic analysis from a child with diarrhea in China.通过宏基因组分析从中国一名腹泻儿童中鉴定出的一种新型人乳头瘤病毒的全基因组序列
Arch Virol. 2015 Feb;160(2):549-52. doi: 10.1007/s00705-014-2252-7. Epub 2014 Nov 2.
8
Complete Genome Sequence of a Novel Human Betapapillomavirus Isolated from a Skin Sample.从皮肤样本中分离出的一种新型人β乳头瘤病毒的全基因组序列
Genome Announc. 2017 Mar 30;5(13):e01642-16. doi: 10.1128/genomeA.01642-16.
9
Complete Genome Sequence of a Novel Human Betapapillomavirus, HPV-159.新型人β乳头瘤病毒HPV-159的全基因组序列
Genome Announc. 2013 May 30;1(3):e00298-13. doi: 10.1128/genomeA.00298-13.
10
Sequence Variation in Multidrug-Resistant Plasmid pLUH01, Isolated from Human Nasopharyngeal Swabs.从人类鼻咽拭子中分离出的多重耐药质粒pLUH01中的序列变异
Microbiol Resour Announc. 2018 Jul 12;7(1). doi: 10.1128/MRA.00835-18. eCollection 2018 Jul.
引用本文的文献
1
Nasopharyngeal metagenomic deep sequencing data, Lancaster, UK, 2014-2015.2014-2015 年英国兰开斯特鼻咽部宏基因组深度测序数据。
Sci Data. 2017 Oct 24;4:170161. doi: 10.1038/sdata.2017.161.
本文引用的文献
1
Morphological characteristics of conjunctival squamous papillomas in relation to human papillomavirus infection.结膜鳞状乳头状瘤与人类乳头瘤病毒感染相关的形态学特征
Br J Ophthalmol. 2015 Mar;99(3):431-6. doi: 10.1136/bjophthalmol-2014-306087. Epub 2014 Dec 19.
2
Persistent toenail onycholysis associated with Beta-papillomavirus infection of the nail bed.与甲床β-乳头瘤病毒感染相关的持续性趾甲甲分离。
Am J Dermatopathol. 2015 Apr;37(4):329-33. doi: 10.1097/DAD.0000000000000110.
3
Human papillomavirus genomics: past, present and future.人乳头瘤病毒基因组学：过去、现在与未来。
Curr Probl Dermatol. 2014;45:1-18. doi: 10.1159/000355952. Epub 2014 Mar 13.
4
The nasal mucosa contains a large spectrum of human papillomavirus types from the Betapapillomavirus and Gammapapillomavirus genera.鼻腔黏膜含有大量的人乳头瘤病毒类型，包括β乳头瘤病毒属和γ乳头瘤病毒属。
J Infect Dis. 2013 Oct 15;208(8):1335-41. doi: 10.1093/infdis/jit326. Epub 2013 Jul 21.
5
Fast and accurate long-read alignment with Burrows-Wheeler transform.基于 Burrows-Wheeler 变换的快速准确长读比对。
Bioinformatics. 2010 Mar 1;26(5):589-95. doi: 10.1093/bioinformatics/btp698. Epub 2010 Jan 15.
6
Prevalence of human papillomavirus DNA sequences in verrucous carcinoma of the lip: genomic and therapeutic approaches.
Cancer Lett. 2005 May 26;222(2):139-43. doi: 10.1016/j.canlet.2004.09.019.
7
Presence of papillomavirus sequences in condylomatous lesions of the mamillae and in invasive carcinoma of the breast.乳头湿疣病变及乳腺浸润性癌中乳头瘤病毒序列的存在情况。
Breast Cancer Res. 2005;7(1):R1-11. doi: 10.1186/bcr940. Epub 2004 Oct 22.
8
Detection of epidermodysplasia verruciformis-associated human papillomavirus DNA in nongenital seborrhoeic keratosis.非生殖器脂溢性角化病中疣状表皮发育不良相关人乳头瘤病毒DNA的检测
Br J Dermatol. 2004 Nov;151(5):1060-5. doi: 10.1111/j.1365-2133.2004.06244.x.
9
Classification of papillomaviruses.乳头瘤病毒的分类
Virology. 2004 Jun 20;324(1):17-27. doi: 10.1016/j.virol.2004.03.033.
10
Detection of HPV-20, HPV-23, and HPV-DL332 in a solitary eyelid syringoma.
Am J Ophthalmol. 2000 Jan;129(1):99-101. doi: 10.1016/s0002-9394(99)00292-5.
Zotero 插件