Kim Kangsan, Gan Han Ming
Genomics Facility, Tropical Medicine and Biology Platform, Monash University Malaysia, Jalan Lagoon Selatan, Bandar Sunway, 47500 Selangor, Malaysia.
School of Science, Monash University Malaysia, Jalan Lagoon Selatan, Bandar Sunway, 47500 Selangor, Malaysia.
J Genomics. 2017 Jul 10;5:77-82. doi: 10.7150/jgen.20216. eCollection 2017.
We report the whole genome sequences of S1 and S2, the first reported bacterial co-culture capable of degrading 4-aminobenzenesulfonate (4-ABS), a recalcitrant industrial waste product. To gain insights into the genetic basis for the syntrophic interaction between this symbiotic pair and also another recently reported associated co-culture, sp. PBC and sp. PBA, we performed detailed genetic analysis of these four strains focusing on the metabolic pathways associated with biotin, -aminobenzoic acid (p), and protocatechuate metabolism. Both assembled draft genomes are missing a majority of the genetic components associated in the biosynthetic pathway of p and biotin. Interestingly, a fused p synthase was found in sp PBA but not in S2. Furthermore, using whole genome data, the taxonomic classification of sp. PBA and S2 (both previously inferred from 16S rRNA gene) was re-investigated, providing new evidence to propose for their re-classification at the genus and species level, respectively.
我们报告了S1和S2的全基因组序列,它们是首次报道的能够降解4-氨基苯磺酸盐(4-ABS,一种顽固的工业废品)的细菌共培养物。为了深入了解这一共生菌对之间以及另一种最近报道的相关共培养物(PBC菌和PBA菌)之间的互营相互作用的遗传基础,我们对这四株菌株进行了详细的遗传分析,重点关注与生物素、对氨基苯甲酸(pABA)和原儿茶酸代谢相关的代谢途径。两个组装的基因组草图都缺少了pABA和生物素生物合成途径中相关的大部分遗传成分。有趣的是,在PBA菌中发现了一个融合的pABA合酶,而在S2中未发现。此外,利用全基因组数据,重新研究了PBA菌和S2(两者之前均从16S rRNA基因推断得出)的分类,分别为它们在属和种水平上的重新分类提供了新证据。